Query= MSMg01no292_i23.b1 MSMg01no292_i23.b1 CHROMAT_FILE:
MSMg01no292_i23.b1 PHD_FILE: MSMg01no292_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:39 2005
(254 letters)
>mm_chr5_93063557_93064213
Length = 657
Score = 393 bits (203), Expect = e-114
Identities = 244/259 (94%), Gaps = 7/259 (2%)
Strand = Plus / Plus
Query: 1 gaaacatggctggcacagtcagatcatggagtagtttatctaaccacgaaggtccagctt 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 201 gaaacatggctggcacagtcagatcatggagtattttatctaaccacgaaggtctagctt 260
Query: 61 cttaggaattagagattgattttgatacctttaggtttttcggggtttctaagtaacagg 120
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaggaactagtgattgattttgatacctttaggtttttcggggtttctaagtaacagg 320
Query: 121 aagacag---taacaat-gtgtaacaatgataaacagtgccaggcccttctcctttctt- 175
||||||| || | | ||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 321 aagacagatttatcc-tcgtgtaacaatgataatcagtgccaggcccttctcctt-cttt 378
Query: 176 ctgtcttctacctaacctttccagacccagcagggcatcagatattagcactatcatttt 235
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctgtcttctacccaacctttccagacccagcagggcatcagatattagcactatcatttt 438
Query: 236 attaacatttaagagactg 254
|||||||||||||||||||
Sbjct: 439 attaacatttaagagactg 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 657
Length adjustment: 9
Effective length of query: 245
Effective length of database: 648
Effective search space: 158760
Effective search space used: 158760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no292_i23.g1 MSMg01no292_i23.g1 CHROMAT_FILE:
MSMg01no292_i23.g1 PHD_FILE: MSMg01no292_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:39 2005
(292 letters)
>mm_chr5_93218262_93218953
Length = 692
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%)
Strand = Plus / Minus
Query: 1 ccaatatttcatttggaaccaccaaaacttgtctggttctagctgatgcatccatacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ccaatatttcatttggaaccaccaaaacttgtctggttctagctgatgcatccatacttg 431
Query: 61 caactgggatctggccctaacctctgtgtgagttcagaactcagccctcatgttcaaagg 120
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caactggaatttggccctaacctctgtgtgagttcagaactcagccctcatgttcaaagg 371
Query: 121 ctcagacagatatttgagggtcattctttagcagccaggcactgagaggcaactccagtt 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 370 ctcagacagatatttgagggtcattctttagcagtcaggcactgagaggcaactccagtt 311
Query: 181 tggaatacatttgtctgaaataaagccatgctatcccaggaatgaaatcgggtcttttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tggaatacatttgtctgaaataaagccatgctatcccaggaatgaaatcgggtcttttat 251
Query: 241 catccagcctccttcgctggggaacaaataaggcattcctttgtatgtgg 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 catccagcctccttcgctggggaacaaataaggcattcctttgtatgtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
