BAC Information

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BAC

Clone NameMSMg01-292M12
Chromosome5 (Build37)
Map Location 70,667,644 - 70,667,959
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1, Gabra2, LOC635092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292M12.T7 (MSMg01no292_m12.b1)MSMg01-292M12.TJ (MSMg01no292_m12.g1)
ACCAG421409AG421410
length758760
length of high quality
(start - end)
320 (46 - 365)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no292_m12.b1 PHD_FILE: MSMg01no292_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:56 2005CHROMAT_FILE: MSMg01no292_m12.g1 PHD_FILE: MSMg01no292_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCGGTTTGTCACCAATTCAATACATTTTTCCTGAAAAAGGATGGTTA
ATTCTTTCTAATCAAGTATCAGAAAAGTAGAAAAGTGCAGTGTTTTCTTT
TTAATACATAATTCATACAATTGCTATTAATAACCAGGAATGATATGTCT
GTAGTGCTTGATGATCAACTCTAAGAAGTACTTGTTGTATCAAGTCAAAG
TGAAATCAAGCCACACACCTCAGAGTCCAACTCTGGGAAACACCAATACC
ACACACCTAAGTTTTGTAACACATTGGTTTCTCTTCCTTCTTTAAACTTA
AAATAACTTATTTTCTTTCAGTTCCCCCCGCCCGGCAGACCAATTAAGCT
AAGGGTATGAGGGTACCACCCAGCACTTTAAATGTAATCAAATTTTGAGT
ATTGGGATGAATTTTTTTCAGAAGTTCTATGTGTTTAGGAGACTGATATT
ACAGTACTGTGACATCAAGTTTTCAGGATATGGTTCTTAAAGATGTCTCC
AACCACATCTCTGATCATCCACCATTGTGGGCCTTCTCAGTATTTTCAGA
GTAATTCTTATTACCATGCTGTCCAACTTATGTGATAAGGCACATAACTA
ATCCTCCCCCGTTTGCTCCTCAAGCTTTTCCCTTTCTCTTTTCCATGCTC
CTCCCTTCTGAATTTCTCCTCTCTTATCCTACCCCCCTCCGCTTATGCTT
TCACTTCT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAATAATACCGAATGGCT
GGGAAGCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGGAATGC
AAATCAAAACAACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGGGAAAAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACTACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTTCTACTGGAGGATC
CCACAATACCTCTCCTTTATATATATCCACAACATGTTCCAACTGGTAAG
AAGGACACATGCTCCACTACCCTCATAGAAAACTTATTTATAATAGCCAG
AAGCTGGAAAGATCACAGATGCCCCTCAGCAGAGGAATGGATACAGAACA
TGTGGTACATTTACATAATGGATTACTACTCAGCTATTAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTTGAG
TGAGGCACACCTATCCAAAAGAACTTCACTTGATATGTACTCCCTGATAT
ATATACATTATCTTATAAAACTTACAATGCCTCTGATATATGATATTATT
TGCAACACCTCTGGATTCCCCTAATAATGATTATTTTATATGTGCCCACC
CTTTGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_m12.b1 MSMg01no292_m12.b1 CHROMAT_FILE:
MSMg01no292_m12.b1 PHD_FILE: MSMg01no292_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:56 2005
         (320 letters)



>mm_chr5_70667440_70668159
          Length = 720

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcggtttgtcaccaattcaatacatttttcctgaaaaaggatggttaattctttct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcggtttgtcaccaattcaatacatttttcctgaaaaaggatggttaattctttct 461

                                                                       
Query: 65  aatcaagtatcagaaaagtagaaaagtgcagtgttttctttttaatacataattcataca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aatcaagtatcagaaaagtagaaaagtgcagtgttttctttttaatacataattcataca 401

                                                                       
Query: 125 attgctattaataaccaggaatgatatgtctgtagtgcttgatgatcaactctaagaagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 attgctattaataaccaggaatgatatgtctgtagtgcttgatgatcaactctaagaagt 341

                                                                       
Query: 185 acttgttgtatcaagtcaaagtgaaatcaagccacacacctcagagtccaactctgggaa 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 acttgttgtatcaagccaaagtgaaatcaagccacacacctcagagtccaactctgggaa 281

                                                                       
Query: 245 acaccaataccacacacctaagttttgtaacacattggtttctcttccttctttaaactt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 acaccaataccacacacctaagttttgtaacacattggtttctcttccttctttaaactt 221

                           
Query: 305 aaaataacttattttc 320
           ||||||||||||||||
Sbjct: 220 aaaataacttattttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)