BAC Information

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BAC

Clone NameMSMg01-293F18
Chromosome5 (Build37)
Map Location 7,472,644 - 7,473,022
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293F18.T7 (MSMg01no293_f18.b1)MSMg01-293F18.TJ (MSMg01no293_f18.g1)
ACCAG421833AG421834
length766763
length of high quality
(start - end)
377 (386 - 762)362 (387 - 748)
definitionCHROMAT_FILE: MSMg01no293_f18.b1 PHD_FILE: MSMg01no293_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:44 2005CHROMAT_FILE: MSMg01no293_f18.g1 PHD_FILE: MSMg01no293_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:28:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACAGAGGAATCTGAAATGACAAAGAAACACTTAAAGAAATGC
TCAACACCCAAATGTCATCAGGGAATACAAATCGAAATTATTTTGAGGTT
TTAATCTTCTACTTTTCATAAATGATAAGATCAACAAAATAAGTGATGAT
GCATGCTTGTAATGATGTGAAGTAAGAGGAGCATTCATCCATTACTAATG
GGAGTACAAACTCATACAACTACTGTGGAAATCAGTGTTATGGCTCTTCA
GGAAAATGAAAGCCAATCCACCTCAATATCTAGCTGTATTATTTAGGCAC
ACATCCAAAGACTGATTCATCCTACCACACGCACTGTTTATTGCTCCTCT
ATGTATTCATAACATTCCCACCAACTGGAAACAATCTAGGTATCCCTCAC
CAAAAGAATGGATGAAAATAGAATCATTCTGAGTTCAGTAACACAGACCC
AGAAAGACACATATGATGTGTATTTGTGTAGTTGTGAATATTAGCTCTTA
TATCAATGATGACCAAGCTACAATTCATACAACCATAGAAAGTACATAGA
GACTAAAACTAAGAGGCTACAGGTATTGTTTAAAAGATAGAGGTGTCAGG
ATGGTGACTACAGAGAGTCTTTGCCCCTATTGTTCAATATTTTTAATGTA
GAAACATACTCTGGATTCTCTCAAAAGAGAAGCATAAACACTAAACAAAC
TAGACACCCTTTGATN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGCAATATATTTCTTATAAATA
ATTTAAATTTGCTGATACTATGATGCCTTCTCCAAAGCAAATACCATATG
ATATTAAAACATACTATATAAAGTGGAGATTTATTTATAATTTTAAAGAA
GTAATATATTTTAATATATAAAGAGAAGTGTCTTTATATATTATAAACAA
TGACTTTGACCAAATGAAAATAACTGGTATGTTTAGCTTCAGTCAAAGAA
ATGTTTATGAATTAACATTCTTCTGACCTCAGTTGCAATAACACATAAGC
ATAAAAGATTTGACTGATTCTTTATTCTTACTGCTGTTAACTGAATTGTG
TCCCTCTAACTTTGTTTTCCCCAATATTTTTTATTAGATATTTTCTTTAT
TTACATTTCAAATGTTATCGCCTTTTCTGGTTTCCCCTCTGAAACCCCCC
TACCCCCTCTCTCCTCCCCTTGATCACCAACCCACCCACTCCAGTTTCAT
GGCCCTGGCATTCCCCTACACTGGGGCATAGAGTCTTCACAGCACCAAGG
GCCTCTGCTCCCATTGATGACGGACTAGGCCATCTTCTGCTACATATGCA
GCTGGAGCCATGAGACTCACCATGTGTATTCTTTGGTTGGTGGTTTAGTC
CCTGGGAGCTCTGGGGTTGCTGGTTAGTTCATACTGTTATTCTTCCTATG
GGGTTGCTTCAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_f18.b1 MSMg01no293_f18.b1 CHROMAT_FILE:
MSMg01no293_f18.b1 PHD_FILE: MSMg01no293_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:44 2005
         (377 letters)



>mm_chr5_7472446_7473222
          Length = 777

 Score =  659 bits (341), Expect = 0.0
 Identities = 369/379 (97%), Gaps = 2/379 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtttattgctcctctatgtattcataacattcccaccaactggaaacaatctaggtatcc 60
           ||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||
Sbjct: 199 gtttattgctcctctatgtattcataacattcctaaaaactggaaacaatctaggtatcc 258

                                                                       
Query: 61  ctcaccaaaagaatggatgaaaatagaatcattctgagttcagtaacacagacccagaaa 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctcaccaaaagaattgatgaaaatagaatcattctgagttcagtaacacagacccagaaa 318

                                                                       
Query: 121 gacacatatgatgtgtatttgtgtagttgtgaatattagctcttatatcaatgatgacca 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 319 gacacatatgatgtgtatttgtgtggttgtgaatattagctcttatatcaatgatgacca 378

                                                                       
Query: 181 agctacaattcatacaaccatagaaagtacatagagactaaaa--ctaagaggctacagg 238
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 379 agctacaattcatacaaccatagaaagtacatagagactaaaagactaagaggctacagg 438

                                                                       
Query: 239 tattgtttaaaagatagaggtgtcaggatggtgactacagagagtctttgcccctattgt 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 439 tattgtttaaaagatagaggtgtcaggatggtgactacagagagtctttgccccaaatgt 498

                                                                       
Query: 299 tcaatatttttaatgtagaaacatactctggattctctcaaaagagaagcataaacacta 358
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 499 tcaatatttttaatgtagaaacatactctggattctctcaaaagagaaacataaacacta 558

                              
Query: 359 aacaaactagacacccttt 377
           |||||||||||||||||||
Sbjct: 559 aacaaactagacacccttt 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)