BAC Information

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BAC

Clone NameMSMg01-293M08
Chromosome5 (Build37)
Map Location 140,700,862 - 140,701,145
singlet/doubletsinglet
Overlap geneMad1l1
Upstream geneUnc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270
Downstream geneFtsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-293M08.T7 (MSMg01no293_m08.b1)MSMg01-293M08.TJ (MSMg01no293_m08.g1)
ACCAG422127AG422128
length729755
length of high quality
(start - end)
314 (40 - 353)286 (68 - 353)
definitionCHROMAT_FILE: MSMg01no293_m08.b1 PHD_FILE: MSMg01no293_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:17 2005CHROMAT_FILE: MSMg01no293_m08.g1 PHD_FILE: MSMg01no293_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TCAGTGAAGGGCTGGGGTCATTCCTTAGTCTCAGTGAAGGGTTATCTACA
TTGAGTTGGCCTATGGTGTACTGGCTTAATTAAATTCACTGATGTAAATA
GGCCCAGTCCACTGTGGGTGGCACCATTCCCTAGGCAGGGCCTGATCATG
AGAAATTCAGTGGAGCACAAACAAGCACATGAACATGTAATCATTAATTC
ATTGTCTTCTGACTGGTGGTGAACATGCAATCATTCATTCATCCTCTTCT
GACTGGGGGTGAACATGCTATCATTCATTCATCCTCTTCTGAAGGGGGTG
AACATGTTTTTTTTCATTCCCCCTCTTCTGACTGGGGGTGAACATGCAAT
CATTCATTCCCCCCCCTCTGAAAGAAGTGAACATGCAATCATTCATTCAT
CCTCTTCTGAAGGGGGTGAACATGCAATCATTCATTCATCCTCTTCTGAC
TGGGCATGTGGTGAGAACAGCTATTCCAATTTTCTCTTGCTTTGACTCTC
CTGCTACAACTTGGTCTAGAACCTGCAATCGTGTACTACACCACACTAAT
TTGCCTAAGTTGCTGTGCCGTTTTGAATACCATGCACTTCACTATGTCCA
AATATTTGAATACTTGGCCCCCAGTATCTTAATTTTCCCCTTTGTGTATG
GCTGCTTTTGCATGCTTCTTTTCACCCCC
AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGGGTGACCTACCCCAGCTCTGCCCCTCCTGCA
ATGTAAATGGCCCTCTATGGGGCAGGCAAGCTCTCAGCTGCTTCCTGTCC
ACAGAGATTCACATTCTAGTCCACCTACGGGACCACCTTAGGCCCACACA
AAACCAGAACCAAGGATTGTGAGGGCACGGAACACAGACAGGATGCACTT
GACCGTTCCACAGAGGGAGCAAGGCTGCCTTTGGAGTCCACATCAATCAA
GCCCAGCAAGTCTCATGAGTTCTAAGGACATCAGAATTCCCAGGCACAGG
GTTGTAGGTTTTTGCCCGNACCAGGGCCGCCCCTGAATGTCTTGGTGATG
GTTTTTTTGCCCCCCCCACAAAAAAAAAAAAAAACCTCTGGGCGGGCACG
TCTGTTTAACAGGTATGTTTAGCACATGGTCCATTGCGGCAGTGCGAATC
TAATTTGCATGCTACACCTCTGTGTTTCTTACCACTATCACCACAAACCT
CCGAATAACACCCTCTGACTTAGTTGCACCAACTTCCTCTTTTTTAAACT
TACCACATTTGCCCGCTTGTCTCTCCCACTGTTATTTTTGGACCTTTTGC
CCCCCCACCGTACTTTTACCAACTTATTCTTTCCCTATCTTCATTGCGTT
ATCTTTATCACCTTCTCTAGCGAAACCCTGCTGGAATATCTCTCTTAACC
AACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no293_m08.g1 MSMg01no293_m08.g1 CHROMAT_FILE:
MSMg01no293_m08.g1 PHD_FILE: MSMg01no293_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:17 2005
         (286 letters)



>mm_chr5_140700662_140701347
          Length = 686

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggtgacctaccccagctctgcccctcctgcaatgtaaatggccctctatggggcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggtgacctaccccagctctgcccctcctgcaatgtaaatggccctctatggggcaggc 260

                                                                       
Query: 61  aagctctcagctgcttcctgtccacagagattcacattctagtccacctacgggaccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctctcagctgcttcctgtccacagagattcacattctagtccacctacgggaccacc 320

                                                                       
Query: 121 ttaggcccacacaaaaccagaaccaaggattgtgagggcacggaacacagacaggatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggcccacacaaaaccagaaccaaggattgtgagggcacggaacacagacaggatgca 380

                                                                       
Query: 181 cttgaccgttccacagagggagcaaggctgcctttggagtccacatcaatcaagcccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgaccgttccacagagggagcaaggctgcctttggagtccacatcaatcaagcccagc 440

                                                       
Query: 241 aagtctcatgagttctaaggacatcagaattcccaggcacaggg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtctcatgagttctaaggacatcagaattcccaggcacaggg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)