TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTGAATTCTCCCTGCTCATTATCATCACTATACCCTGTAAAATCT
AAGATATTAATGATAAATCCTTTCTTTCCATAAAAATGAAAGGTTTTGCC
TTCCATGCCTGGGTGGTAAGTTGCTAGGGATGAAAGAAAAAACAAACAAG
TCAACAAGGCAAAACTGAGTCTGTGGATAGGAGACATTTGTAAGATTTGA
AGATTTTATTTTACCTTTTAAGACAGTCTTCTAACATGGAAGGATATTTC
ACTTAATTTGTTTAGTCTGCTGAAAACAAATGAAGCAAAACATATAAAAC
ACTTATTATTCTTAGTATTTCGTGCATATCATGTGGACAAATGTTGGGAT
TATGCTTATTTTAAAGAATAATTTTGAACTTCTATATGATATTGTCTTCT
GGTCACATGTGTAATAATTTAGGTTTCATAGAAGTAATTACATTTCATTC
TCCTTGTACAATTAGTGAAAAGAGAAAAGAAAGCCTGAACCTGCTCTTTA
CAGACTCATGCTGGGTTTGTGAGGGTCATTAACACTTTGGAAAACATCTC
TTCACACTTTATATGTCTGTCCCTAAGAAAAAGGAACTTCGAAGATCAAA
CGTTTTAGCCACTCCACTTTCCTTTCTACTACCTTGCTTAAAAGTTTTGC
AGAGAATATTTATCAAGCGTTTGCTGCAACAGGTCTCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCAGAGGAATACTGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACAACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACTGGAGGATC
CAGCAATACCTCTCTGGTGTTTATCTCCACCCCACGCCCCAACTCGTAAG
AAGGACACTATGTTCATAGCAGCCTTAAAAATAATAAACAGAAGCTGGAG
AGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAAT
CTACACAATGGGGTACTACTCAGCTATTAAATAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGTCCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTA
GCCCCAAACCTAGGATACCCAAGATATATGATATATTTTGCTAATCACAT
GAAACTCAAGAAGAATGAAGACCGAAGTGTGTACACTATG

Query= MSMg01no293_n11.b1 MSMg01no293_n11.b1 CHROMAT_FILE:
MSMg01no293_n11.b1 PHD_FILE: MSMg01no293_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:22 2005
         (595 letters)



>mm_chr5_47288683_47289677
          Length = 995

 Score = 1089 bits (563), Expect = 0.0
 Identities = 584/591 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactgaattctccctgctcattatcatcactataccctgtaaaatctaagatatt 64
           |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 795 gaattcactgaagtctgcctgctcattatcatcactataccctgtaaaatctgagatatt 736

                                                                       
Query: 65  aatgataaatcctttctttccataaaaatgaaaggttttgccttccatgcctgggtggta 124
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aatgataaaaccttcctttccataaaaatgaaaggttttgccttccatgcctgggtggta 676

                                                                       
Query: 125 agttgctagggatgaaagaaaaaacaaacaagtcaacaaggcaaaactgagtctgtggat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agttgctagggatgaaagaaaaaacaaacaagtcaacaaggcaaaactgagtctgtggat 616

                                                                       
Query: 185 aggagacatttgtaagatttgaagattttattttaccttttaagacagtcttctaacatg 244
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 615 aggagacatttgtaagatttaaagattttattttaccttttaaggcagtcttctaacatg 556

                                                                       
Query: 245 gaaggatatttcacttaatttgtttagtctgctgaaaacaaatgaagcaaaacatataaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaaggatatttcacttaatttgtttagtctgctgaaaacaaatgaagcaaaacatataaa 496

                                                                       
Query: 305 acacttattattcttagtatttcgtgcatatcatgtggacaaatgttgggattatgctta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acacttattattcttagtatttcgtgcatatcatgtggacaaatgttgggattatgctta 436

                                                                       
Query: 365 ttttaaagaataattttgaacttctatatgatattgtcttctggtcacatgtgtaataat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttttaaagaataattttgaacttctatatgatattgtcttctggtcacatgtgtaataat 376

                                                                       
Query: 425 ttaggtttcatagaagtaattacatttcattctccttgtacaattagtgaaaagagaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttaggtttcatagaagtaattacatttcattctccttgtacaattagtgaaaagagaaaa 316

                                                                       
Query: 485 gaaagcctgaacctgctctttacagactcatgctgggtttgtgagggtcattaacacttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaaagcctgaacctgctctttacagactcatgctgggtttgtgagggtcattaacacttt 256

                                                              
Query: 545 ggaaaacatctcttcacactttatatgtctgtccctaagaaaaaggaactt 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggaaaacatctcttcacactttatatgtctgtccctaagaaaaaggaactt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)