BAC Information

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BAC

Clone NameMSMg01-294B16
Chromosome5 (Build37)
Map Location 86,325,192 - 86,477,012
singlet/doubletdoublet
Overlap geneCenpc1
Upstream genenone
Downstream geneLOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294B16.T7 (MSMg01no294_b16.b1)MSMg01-294B16.TJ (MSMg01no294_b16.g1)
ACCAG422366AG422367
length729730
length of high quality
(start - end)		510 (50 - 559)573 (81 - 653)
definitionCHROMAT_FILE: MSMg01no294_b16.b1 PHD_FILE: MSMg01no294_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:42 2005CHROMAT_FILE: MSMg01no294_b16.g1 PHD_FILE: MSMg01no294_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,476,507 - 86,477,012)(86,325,192 - 86,325,764)
sequence
AACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTAAATATTGTACTGTTTCATTTTTTCTTTTACCTTTTTAA
CTTTACGTTAACAACATCATTATGTATTTCTATGAACTTGCTTTTTTGTA
CATATAATCATGTCTGCAGCTTTAACTCTTAGAGACATTATGCAATGTCC
CAGCCTTTGTTAATTTCCTCTTTGTTCAGTAGTTCTTTGTTGTTCTTTCT
TCGGCTACTTTGTTGTTTAGAAATTTCTCCCAAATTTTAAAAGCATGTGT
CTAATTAGAATTGACAATATACTAAAAGTAGATGAAATGCATTTCTTCTG
TGCTCAGTGCCCAGAGTCACATTCCAAACCAGTTCCAGTGTCTTCAAGGA
CGGGAGAAGCTTCTCTGCAAGAGTCTGCAGAGCCCAGTGAAGCCGCTGGT
GGATCAGGTTGGTAGCGACGTGCCAATTAAAAACCTTCAGGACAAAGGCT
GTATATGCATCGTGTCAGGACACAGAGCAGAGTCAGGCTAGGTAGAGTTG
GTGTGGTTAGGGTGGNGTTTTTTTCTCCCCTTTGCCTTTTCTTTCTTTTA
CTTTGNAATANGTGCTGCTGCTTTTTAATCTTTGCTCAAATTACAAGAAG
ACTATTCTCTTTGAGCTGATAAACTCCAAGATTACCTGAAAATTTTATCA
TTGCTTCCATCATTTTGTTGGAAATTCAN

NAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTCCTGCAGAACAGGAA
CCCGTGCCAAAATTTATCAACATTTAATACAGTCCAGCAGAAGTGACTAC
AGTTCTCTTCTTGTCACAGATTCAAAGTAATTCAAAAGCATTCTGTGAAC
AAGAGCCCAAAAGCATTGTTTAAAAAATTATTTTAACCATTATTGAAATT
ATAATAAGGGTTATAAGGGTAGGTTCATTCAAAAACAAAATTATTTTAAA
AGGCCTTCATCTGGAAGGAAAGAGAGCAACCCACAATATTAAAGGAGAAA
ACAAAAGAGGATCACAAGCCACATGGATGGGCAGAACAATGGAGGGTGGG
CAGAACAGGTAAGGTGACACGGGGCTACGGCACCTCTCGGGAGAATATAC
AAAAGGGGCAGTCATTTGGTGCCACCAAAAACCTGGCTCAAGTCAATGCT
AAATCTGAGCTGGATGGAAAAATATCAGCTGAATCATTGCCCGGAGAGGA
AAGGGGAAAGGGGGAGTGTAGGAAAGCCCAATTGCTGCTTTTTATAAACA
TTCAGGGACAGCCAAAGCCAAAACTGTCAAGCAGATGAAAGCTCTTGCTG
GTGAGAATTTGTTCCACGTTAGGCTCCCTCTCTTTCCTCTTCAAAGTTTT
TAGTAGCTCAAATAGCATCACCCATTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_b16.b1 MSMg01no294_b16.b1 CHROMAT_FILE:
MSMg01no294_b16.b1 PHD_FILE: MSMg01no294_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:42 2005
         (510 letters)



>mm_chr5_86476303_86477212
          Length = 910

 Score =  948 bits (490), Expect = 0.0
 Identities = 502/506 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaatattgtactgtttcattttttcttttacctttttaactttacgttaaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gaattcctaaatattgtactgtttcattttttcttttacctttttaactttacgttaaca 651

                                                                       
Query: 65  acatcattatgtatttctatgaacttgcttttttgtacatataatcatgtctgcagcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 acatcattatgtatttctatgaacttgcttttttgtacatataatcatgtctgcagcttt 591

                                                                       
Query: 125 aactcttagagacattatgcaatgtcccagcctttgttaatttcctctttgttcagtagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aactcttagagacattatgcaatgtcccagcctttgttaatttcctctttgttcagtagt 531

                                                                       
Query: 185 tctttgttgttctttcttcggctactttgttgtttagaaatttctcccaaattttaaaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tctttgttgttctttcttcggctactttgttgtttagaaatttctcccaaattttaaaag 471

                                                                       
Query: 245 catgtgtctaattagaattgacaatatactaaaagtagatgaaatgcatttcttctgtgc 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 470 catgtgtctaattagaattgacaatatgctaaaagtagatgaaatgcatttcttctgtgc 411

                                                                       
Query: 305 tcagtgcccagagtcacattccaaaccagttccagtgtcttcaaggacgggagaagcttc 364
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 410 tcagtgcccagagtcacattccaaaccagttccagtgtcttcaaggacaggagaagcttc 351

                                                                       
Query: 365 tctgcaagagtctgcagagcccagtgaagccgctggtggatcaggttggtagcgacgtgc 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 350 tctgcaagcgtctgcagagcccagtgaagccgctggtggatcaggttggtatcgacgtgc 291

                                                                       
Query: 425 caattaaaaaccttcaggacaaaggctgtatatgcatcgtgtcaggacacagagcagagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 caattaaaaaccttcaggacaaaggctgtatatgcatcgtgtcaggacacagagcagagt 231

                                     
Query: 485 caggctaggtagagttggtgtggtta 510
           ||||||||||||||||||||||||||
Sbjct: 230 caggctaggtagagttggtgtggtta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no294_b16.g1 MSMg01no294_b16.g1 CHROMAT_FILE:
MSMg01no294_b16.g1 PHD_FILE: MSMg01no294_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:42 2005
         (573 letters)



>mm_chr5_86324992_86325964
          Length = 973

 Score = 1100 bits (569), Expect = 0.0
 Identities = 572/573 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtcctgcagaacaggaacccgtgccaaaatttatcaacatttaatacagtccagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtcctgcagaacaggaacccgtgccaaaatttatcaacatttaatacagtccagcag 260

                                                                       
Query: 61  aagtgactacagttctcttcttgtcacagattcaaagtaattcaaaagcattctgtgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgactacagttctcttcttgtcacagattcaaagtaattcaaaagcattctgtgaac 320

                                                                       
Query: 121 aagagcccaaaagcattgtttaaaaaattattttaaccattattgaaattataataaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagagcccaaaagcattgtttaaaaaattattttaaccattattgaaattataataaggg 380

                                                                       
Query: 181 ttataagggtaggttcattcaaaaacaaaattattttaaaaggccttcatctggaaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttataagggtaggttcattcaaaaacaaaattattttaaaaggccttcatctggaaggaa 440

                                                                       
Query: 241 agagagcaacccacaatattaaaggagaaaacaaaagaggatcacaagccacatggatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagagcaacccacaatattaaaggagaaaacaaaagaggatcacaagccacatggatgg 500

                                                                       
Query: 301 gcagaacaatggagggtgggcagaacaggtaaggtgacacggggctacggcacctctcgg 360
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 gcagaacaatggagggtgggcagaacaggtaaggtgccacggggctacggcacctctcgg 560

                                                                       
Query: 361 gagaatatacaaaaggggcagtcatttggtgccaccaaaaacctggctcaagtcaatgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaatatacaaaaggggcagtcatttggtgccaccaaaaacctggctcaagtcaatgct 620

                                                                       
Query: 421 aaatctgagctggatggaaaaatatcagctgaatcattgcccggagaggaaaggggaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatctgagctggatggaaaaatatcagctgaatcattgcccggagaggaaaggggaaag 680

                                                                       
Query: 481 ggggagtgtaggaaagcccaattgctgctttttataaacattcagggacagccaaagcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggggagtgtaggaaagcccaattgctgctttttataaacattcagggacagccaaagcca 740

                                            
Query: 541 aaactgtcaagcagatgaaagctcttgctggtg 573
           |||||||||||||||||||||||||||||||||
Sbjct: 741 aaactgtcaagcagatgaaagctcttgctggtg 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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