BAC Information

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BAC

Clone NameMSMg01-294E09
Chromosome5 (Build37)
Map Location 147,387,810 - 147,387,923
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667065, Cyp3a41, Cyp3a44, Cyp3a11, Cyp3a25, LOC667098, LOC667104, LOC100041449, LOC433961, EG622306, 1700001J03Rik, LOC667121, Rnf6, Cdk8, Wasf3, LOC623198, LOC622924, 4930449I24Rik, LOC100041548, LOC100041554, LOC100041566, LOC100041578, EG667172
Downstream geneGpr12, Usp12, 1700041I07Rik, Rpl21, Rasl11a, LOC100039699, LOC627218, Gtf3a, Mtif3, Lnx2, Rpo1-3, Gsh1, Pdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294E09.T7 (MSMg01no294_e09.b1)MSMg01-294E09.TJ (MSMg01no294_e09.g1)
ACCAG422490AG422491
length723727
length of high quality
(start - end)
292 (67 - 358)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no294_e09.b1 PHD_FILE: MSMg01no294_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:55 2005CHROMAT_FILE: MSMg01no294_e09.g1 PHD_FILE: MSMg01no294_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGTGTTACATGAAGTTGCTGGTGACATTAACATCTCTGTACTCCAGG
GAACCTCTGCGTTTATTCCGCCACATCGGTGCCAAGCAGCCCTTGGAAAT
GAATGTGATATTGTGATATCAGCTTGTAGATTTCTGCTCACACTAGTTAC
CATTTGCAGGGTGTTGCTAATTCATCAACCTCAGCTGAACTCCAGCTGCC
GTGAGCTCTGAGCCACTGTCACCCGATGTCTGATGTCCCTCAGATAGAAT
GCAACTTGGCAATGAAATCCACTGGCACTGTAGAGTCTAGTCTTTTTCCA
TTCCCGTTTGTCTGGACCCACCTGCCCGTTCTAGTCGGACTTCATCCAAC
ATCTTCTGTCCCCCCACACCTGACTTCCCTAGTCCTGAGATGGCATACAC
GTGAATGCACACATGTGCTCGGGTATGGACATGTAGCTTCATAATGATTT
TTTTTTTGGTGGGGGGTGCACCTAGGCAAGCCTGCATCAAGAGAACTTTA
CACCAAGTCCTGGAAGATCTAGATCTGTACCATCTCACCAACCTTCACGC
CAGCCTCTCGGCCTTGTGACTCATAGTCCAGATAACGCACTATTCAGCAA
CAGTGAGCAGACCCGAGGCATAGCTTTGCTGGTCTGCACAGCCAGCTGGC
ATGAACCCATTGCAGCTCAGCTT
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGTAGAA
AAGCACCTGGAAAAATGTTCCACATCCGTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAGTTCAGGTGATAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCATAAAATTGGACATAGTACTACCGGAGGATCCCG
CAATACCTCTTTTTTTCATACCCCCCCCACCCATGTTTCAACCGGTAAGA
AGGACACATGCACCACCCCCCCCATAAAAAAAATATTTATAATAGCCGGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGTCCAGAAACTTAGGATACCCAAGATATAAGATACCATTTG
CTAAATACTTGAAACTCCAGAAGAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_e09.b1 MSMg01no294_e09.b1 CHROMAT_FILE:
MSMg01no294_e09.b1 PHD_FILE: MSMg01no294_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:55 2005
         (292 letters)



>mm_chr5_147387610_147388298
          Length = 689

 Score =  188 bits (97), Expect = 4e-52
 Identities = 111/117 (94%), Gaps = 3/117 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttgctggtgacattaacatctctgtactccagggaacctctgcgtttattccgccacat 60
           ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||
Sbjct: 314 gttgctggtgacattaacatctctgtactccagggaacctctgcggtcattctgccacat 255

                                                                    
Query: 61  cggtgccaagcagcccttggaaatgaatgtgatattgtgatatcagcttgtagattt 117
           ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||
Sbjct: 254 cggtgccaagcagcccttggaaatgaatgtgata---tgatatcagcttgtagattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 689
Length adjustment: 9
Effective length of query: 283
Effective length of database: 680
Effective search space:   192440
Effective search space used:   192440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)