BAC Information

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BAC

Clone NameMSMg01-294L07
Chromosome5 (Build37)
Map Location 97,236,368 - 97,401,536
singlet/doubletdoublet
Overlap geneAnxa3, EG666266
Upstream geneLOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1
Downstream geneLOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294L07.T7 (MSMg01no294_l07.b1)MSMg01-294L07.TJ (MSMg01no294_l07.g1)
ACCAG422810AG422811
length732752
length of high quality
(start - end)
236 (131 - 366)199 (129 - 327)
definitionCHROMAT_FILE: MSMg01no294_l07.b1 PHD_FILE: MSMg01no294_l07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:26 2005CHROMAT_FILE: MSMg01no294_l07.g1 PHD_FILE: MSMg01no294_l07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,401,304 - 97,401,536)(97,236,368 - 97,236,565)
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATACCTTCTTGCCTCTGCCTCTCAGATGGTGGTATTTAAGG
CATTCACCACCATGTTGAAATATTGTCCAAGTGACTTGACTTGAGATATG
TATGTGCTAGGGATGAACTGACTCATTAAATATCAAGAAAAGGAAAAAAG
ATGTGCTTGTACTATGCCACAGTACACCTAATATTTTTGACACAGTTACT
ACCATGGTCTATATGTTTGTGCCTCCCCACATTCATATATTAATATCTCA
AAATTCAAGGCAATGGTATTCACAAAATATTCTTAGGGAGGTGAACAAAT
CATGAAGGAAGAGTTTTACATGANTTCGCCCGCCANNCCTAACATGGNAT
CCAAGGGAAAATTGTTCATGCCTGCCCTTAATAAAAAAAAAAAAAAATCG
GTCGCGGGTTAGGAAAAATTGGAAAACTTCAACCTCCCTAAAAAAATGGA
TTTTCCCCCTCTAATTTTGGGATTTTTCCGAGTTTTCCATTAAAATTGTG
AAAAAAAAAATAAATTTTTTCTCCGTGGGTTTCTTTATATAAATACCTTC
TTGGGGTTGTTCGTTCATTAACAAACAACTTATGGGTTTTTAACTTTTTT
TCTGTTTCCTTTTCTCTCGTCTGATTGAAAATATTACTANTACCATTTTC
TAATAATAATATTTACTATATATTTACTTATC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCCCGAAAATCCTGTTTGTTTTCTTACTTCTTCTCA
TTACTTTACTTCCTGGTGGTTTTCACCCTCCTTTTTCTTTTGGGAGCATT
TAAAGGTCAAGTTTGAGAAAAGGGAAGAAACTAAATATACACAAGACAGT
AGGTGGAATGCTGACCAAGCATGATTTTGAAAGTGGTTTTAGCCAAATGT
CCATGGAGGTTCCCCATTGGCACTGACTGCGGTACTAGGGAAAGGACCTC
AACTAAGAATCAATAAATGGGCCAGGTTTTGTTGGTGTATACCTTTAATC
CCAGCACTTGGAAGTTTGATGCATGTCCCCTCACCACCCCGAGGCCAGCC
TGGTCTACAAAGTGAGTTCCAGGACAGAAAAAAAAAAAAAAAAAAACCCT
GGCTTGAGAAACCAAAAGAATAAAAACCAAACAAACTAACAAATCAAAAG
AATCATTATATGGATTTTGTCTGACAAAACCGGAAGGCTGCAATGAAACA
GGAAATCCAAAGAGTTTTGGCTGTCACTATCAACTTTCCTGAATACACCA
CTTCGTAATTGAATTTCCTTAGCTTTCAACCCGTGAAATATATCAGGATC
TGCCTTGTGTGTTTTTATTTCTTAGATTTTTAAGGTGAACCAAGAATTGA
ATTTGTATTTGTTGGCATAATGGCCAATTGCGCGATTCATTTCTATACAT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_l07.b1 MSMg01no294_l07.b1 CHROMAT_FILE:
MSMg01no294_l07.b1 PHD_FILE: MSMg01no294_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:26 2005
         (236 letters)



>mm_chr5_97401104_97401739
          Length = 636

 Score =  397 bits (205), Expect = e-115
 Identities = 226/233 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgacttgacttgagatatgtatgtgctagggatgaactgactcattaaatatcaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtgacttgacttgagatatgtatgtgctagggatgaactgactcattaaatatcaagaaa 374

                                                                       
Query: 61  aggaaaaaagatgtgcttgtactatgccacagtacacctaatatttttgacacagttact 120
           ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 373 aggaaaacagatgtgcttgtcccatgccacagtacacctaatatttttgacacagttact 314

                                                                       
Query: 121 accatggtctatatgtttgtgcctccccacattcatatattaatatctcaaaattcaagg 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gccatggtctatatgtttgtgcctccccacattcatatattaatatctcaaaattcaagg 254

                                                                
Query: 181 caatggtattcacaaaatattcttagggaggtgaacaaatcatgaaggaagag 233
           ||||||||||||||||| |  ||||||||||||||||||||||||||||||||
Sbjct: 253 caatggtattcacaaaagagccttagggaggtgaacaaatcatgaaggaagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no294_l07.g1 MSMg01no294_l07.g1 CHROMAT_FILE:
MSMg01no294_l07.g1 PHD_FILE: MSMg01no294_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:27 2005
         (199 letters)



>mm_chr5_97236168_97236766
          Length = 599

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctttttcttttgggagcatttaaaggtcaagtttgagaaaagggaagaaactaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctttttcttttgggagcatttaaaggtcaagtttgagaaaagggaagaaactaaatat 260

                                                                       
Query: 61  acacaagacagtaggtggaatgctgaccaagcatgattttgaaagtggttttagccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaagacagtaggtggaatgctgaccaagcatgattttgaaagtggttttagccaaat 320

                                                                       
Query: 121 gtccatggaggttccccattggcactgactgcggtactagggaaaggacctcaactaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccatggaggttccccattggcactgactgcggtactagggaaaggacctcaactaaga 380

                             
Query: 181 atcaataaatgggccagg 198
           ||||||||||||||||||
Sbjct: 381 atcaataaatgggccagg 398


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)