TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTTGTAGCTGAGGATGACCCTGAATCATTCATCTTCCTGTCTCCA
TCTTCTAAATGGATCTCTAGGCACCCACCATCAAACATCCTGATTATGTA
GTGCTGGCGACGGAACCCAGGGCTTTGAACATGTAAGATGAATACTCTAC
CAACTGGGCTACATCTCCAGCCCCATGTATTTTATTCTGTTTTCTCCTCT
CCACTGCTCTACTTACCCCTACCCCTACCCCTCCATACCCCACCCCCTCT
TGCTGGTCCCTTTTCCCCACTTCCCTTTTCTGATCTCATGTCACCTGTAC
TTCATTTCTCTTTCTCATTTCCCTTCGCTCCTCCTTAGTCGGCTTCTTTC
CTTCTTCCTGCACCCATGCCCTGTCTTTTATATCTGTCAGGGAGCAGAGA
GGATGGATGGGGCACTTTTATGCTCTGTGTTATAAAGACATTTATATTTC
ATTTTATGGTATCTACATAGACATGTTATTAACTACTTAGCACACACACA
CACGTTTGTTCAGACATGTGGCTCATCATCTGAGCAAACGGGCAAGGCTG
AGTTCTGGAATGATTATTTCCTGCCTCTTCTCCTATGTGATCTGCTGACT
GGAGAGGAGACATAAGATAGTTAGCCTGCGACCTTCCTGGATTACTGGCT
TTCTGAATAAAGTGAGAATTAAAGATTGAAATTCAGTTCTATCTGTGGTT
ACTGGCA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTAATATATTTTATTCTTCTTGCTA
CTGGTATTGAATTTAAAAATATGAGCTTCTATATTGTTGACTAGCAAACA
TGGGTCTTAGTTAAAGCTAGATGTGTATTAGCTTCTGTGGTGGGGCATTT
TTCAGCACTTGAAATTTAGTATTTAGGTAAGTAATACCTTTAGTTTTCCT
GTGCTTTTCCAAGGCTTTTAAAACCAGCTAAAAGTAGGTTTAATTTTTCA
AAAGCTTTCTTTTATCTTTTATATTCTTACTAGGTTAAAATGCCTTCAGC
TTAATCTCATATTTTTATACTCTCTCATTTATATGGAACCTAAATTTGAT
AAGTTTCTTCATGACCATGTAAACTTTTCTTTTAATATTAAATTTTCTTT
TACTACCTAGCAAAGGATTTTAAATAAAAATAAGATTTCACTCCTTATCT
CCTTATTTGAATTAACAAGGACTGATCATATAAAATATGGCTAAGTGTCC
TACTTTACAAAAACTTTTATTTCTTCTGAAGCATTTTTCATTAAAGGTTA
TTAATAGTATTTCCAGAGTTGTTAATATTGCCAGCGTGTTGATGTAATAA
TATGTGATCATCTGCTTTTGTATTGTGAAAGCCTTTGCTTTGACTCCTGT
GCTTTGTCATAGGAAATTATTTACCAGTGCTTCATTCTGTTTCTGCTAAA
AAATAACA

Query= MSMg01no295_c17.b1 MSMg01no295_c17.b1 CHROMAT_FILE:
MSMg01no295_c17.b1 PHD_FILE: MSMg01no295_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:01 2005
         (368 letters)



>mm_chr5_45933915_45934682
          Length = 768

 Score =  681 bits (352), Expect = 0.0
 Identities = 364/368 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctccttagtcggcttctttccttcttcctgcacccatgccctgtcttttatatctgt 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 201 ctcctccttagtcggcttctttccttcttcctgcattcatgccctgtcttttatatctgt 260

                                                                       
Query: 61  cagggagcagagaggatggatggggcacttttatgctctgtgttataaagacatttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggagcagagaggatggatggggcacttttatgctctgtgttataaagacatttatat 320

                                                                       
Query: 121 ttcattttatggtatctacatagacatgttattaactacttagcacacacacacacgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ttcattttatggtatctacatagacatgttattaactacttagcacacacacacacgttc 380

                                                                       
Query: 181 gttcagacatgtggctcatcatctgagcaaacgggcaaggctgagttctggaatgattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcagacatgtggctcatcatctgagcaaacgggcaaggctgagttctggaatgattat 440

                                                                       
Query: 241 ttcctgcctcttctcctatgtgatctgctgactggagaggagacataagatagttagcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcctgcctcttctcctatgtgatctgctgactggagaggagacataagatagttagcct 500

                                                                       
Query: 301 gcgaccttcctggattactggctttctgaataaagtgagaattaaagattgaaattcagt 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 gcgaccttcctggattactggctttctgaatacagtgagaattaaagattgaaattcagt 560

                   
Query: 361 tctatctg 368
           ||||||||
Sbjct: 561 tctatctg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_c17.g1 MSMg01no295_c17.g1 CHROMAT_FILE:
MSMg01no295_c17.g1 PHD_FILE: MSMg01no295_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:01 2005
         (288 letters)



>mm_chr5_46119321_46120008
          Length = 688

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttaatatattttattcttcttgctactggtattgaatttaaaaatatgagcttctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctttaatatattttattcttcttgctactggtattgaatttaaaaatatgagcttctata 427

                                                                       
Query: 61  ttgttgactagcaaacatgggtcttagttaaagctagatgtgtattagcttctgtggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttgttgactagcaaacatgggtcttagttaaagctagatgtgtattagcttctgtggtgg 367

                                                                       
Query: 121 ggcatttttcagcacttgaaatttagtatttaggtaagtaatacctttagttttcctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggcatttttcagcacttgaaatttagtatttaggtaagtaatacctttagttttcctgtg 307

                                                                       
Query: 181 cttttccaaggcttttaaaaccagctaaaagtaggtttaatttttcaaaagctttctttt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 306 cttttccaaggcttttaaaaccagctaaaagtaggtttaatttttcaaaagcttcctttt 247

                                                         
Query: 241 atcttttatattcttactaggttaaaatgccttcagcttaatctca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atcttttatattcttactaggttaaaatgccttcagcttaatctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)