ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGTCATTAAGGTTAGTAGCAAGTGCCTTTACCTGCTGAGCCACCTCA
TCAGCTCCAAGTTCTGAACCTTTTGTTGCCTAAATAATTGCTGTGCATCC
TAGTAGTACCTGAACTTTGGAAAACCCAACAGGAATACTTGAACAGGACA
AAATTATAATTTTGCCAAAGCCAAATATAAACATTGTCAACAGGGTGTTG
ATCACTACTAAGCATTTAAGAGTTCCCTTCAAAATTGTCCTCTCCTCAAA
GGAAAGTTCCTGAGCATCTTTGTTGGCTCCCAAGACCCATTGTGGCATCC
AAGGGATGATTANCTANNTCCCANACCGNTCCCCCATCATTTGCTTGCTT
TAGCCATGTTGACACCCCCACTGAAAAATNCAAAAAAAACAGCGGAGGGG
GGGTTCTGTTTGAGCACAAGTCAACACAGTGACCCTAACAGCAACCACTA
ATGGTCATTGCGGCCTTCACCACTGCACAGTTGTGGTAAATAAATCAGCT
CATTAACCCAATTAAAAGCCAGTTTCACTTAACAATGAGATAACTTAAGC
TGAATTTTATTAATTCTCCATCTTGGAGTATATCTTTTCAATAGACCACA
TGACCAGTAATAGAGGACATAGTTCTGCTACTCCTCCGATTAATAAATGA
TCTTCTGATAAGTTCCTGTCACACCCCTTTAACTTCCTTA

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAAATTCTTGCCCTTAGATTTTTA
TTGTAAGCTGGAGGAAAACCAAATAGTTAAGACGTTTGCTCCTGGGCAGA
CTTCAAAGACTCCCTGTTAGCCTCTGCTCACATAAAGTAATGCTTCCTTC
CCCTACTGAACATCAAAATAGTAGTCACAATTAATTACCTCTGTTTAAAG
TCCTATTAAATGTAATGGCCAATTTATTTTAACAGGGAAGGGAGGGCAGA
CTCTGGGCAGGGGCTGGTCCATGGCATGTTCAAATCTGCTCCCTCTGGTT
GGGGACAAAGCCGTATTTTTTTTATGCCCCCCCCCCCCCATCAGCACACA
GTGTCAGGCACACGTGCGGACTCCCAGCAGAAGAAAAAAAAGAAAGCTGT
GGGGAGGTTGCTGGGCTTTATACTTTCACTACTGGATATATTTAATTCAT
TTATCCATCACCAAGAACGAAACATTCACGACAGCATTATAACTGGAAAG
ACAATTGCCGTTCTATCCTTTTCACTAACTCCTGCCCATTACCTGCGTGC
AGCCCTTCCTCACCCCAACGCTTAGTCTCTTGCTCTCTTGTTTTTCTCTT
GTCCAGGAAACCCATGACACCCTCACATTCTTCCCTATATTCCCCCTTAC
TCCCCTTCTTTTCCGCTTTTCCCCCTTCCCTTCCCTTCTTTCCTTCCTT

Query= MSMg01no295_d20.b1 MSMg01no295_d20.b1 CHROMAT_FILE:
MSMg01no295_d20.b1 PHD_FILE: MSMg01no295_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:07 2005
         (317 letters)



>mm_chr5_107845548_107846264
          Length = 717

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagtcattaaggttagtagcaagtgcctttacctgctgagccacctcatcagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ggaattccagtcattaaggttagtagcaagtgcctttacctgctgagccacctcatcagc 521

                                                                       
Query: 64  tccaagttctgaaccttttgttgcctaaataattgctgtgcatcctagtagtacctgaac 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 520 tccaagttctgaaccttttgtttcctaaataattgctgtgcatcctagtagtacctgaac 461

                                                                       
Query: 124 tttggaaaacccaacaggaatacttgaacaggacaaaattataattttgccaaagccaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttggaaaacccaacaggaatacttgaacaggacaaaattataattttgccaaagccaaa 401

                                                                       
Query: 184 tataaacattgtcaacagggtgttgatcactactaagcatttaagagttcccttcaaaat 243
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tataaacattgtcaacaggatgttgatcactactaagcatttaagagttcccttcaaaat 341

                                                                       
Query: 244 tgtcctctcctcaaaggaaagttcctgagcatctttgttggctcccaagacccattgtgg 303
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 340 tgtcctctcctcaaaggaaagttcctgagcatctttgcgggctcccaagacccattgtgg 281

                         
Query: 304 catccaagggatga 317
           ||||||||||||||
Sbjct: 280 catccaagggatga 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_d20.g1 MSMg01no295_d20.g1 CHROMAT_FILE:
MSMg01no295_d20.g1 PHD_FILE: MSMg01no295_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:07 2005
         (291 letters)



>mm_chr5_107669168_107669858
          Length = 691

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaattcttgcccttagatttttattgtaagctggaggaaaaccaaatagttaagacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaattcttgcccttagatttttattgtaagctggaggaaaaccaaatagttaagacg 260

                                                                       
Query: 61  tttgctcctgggcagacttcaaagactccctgttagcctctgctcacataaagtaatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgctcctgggcagacttcaaagactccctgttagcctctgctcacataaagtaatgct 320

                                                                       
Query: 121 tccttcccctactgaacatcaaaatagtagtcacaattaattacctctgtttaaagtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttcccctactgaacatcaaaatagtagtcacaattaattacctctgtttaaagtcct 380

                                                                       
Query: 181 attaaatgtaatggccaatttattttaacagggaagggagggcagactctgggcaggggc 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaaatgtaatggccaattaattttaacagggaagggagggcagactctgggcaggggc 440

                                                           
Query: 241 tggtccatggcatgttcaaatctgctccctctggttggggacaaagcc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtccatggcatgttcaaatctgctccctctggttggggacaaagcc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)