Query= MSMg01no295_j19.b1 MSMg01no295_j19.b1 CHROMAT_FILE:
MSMg01no295_j19.b1 PHD_FILE: MSMg01no295_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:35 2005
(682 letters)
>mm_chr5_99950857_99951939
Length = 1083
Score = 1276 bits (660), Expect = 0.0
Identities = 675/680 (99%), Gaps = 1/680 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttagtgcaaattaatggacagaataatgtgttttctttggcatttttatacat 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttagtgcaaattaatgaacagaataatgtgttttctttggcatttttatacat 263
Query: 64 gcacatagtgtattctctaacctagggtcaggctctgcccatgccttgggcatttcaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcacatagtgtattctctaacctagggtcaggctctgcccatgccttgggcatttcaaag 323
Query: 124 caggttctggaagacttgcggtcaatccactcctcacagaagggaagtttcccttcacct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caggttctggaagacttgcggtcaatccactcctcacagaagggaagtttcccttcacct 383
Query: 184 ttgtgaagggcctggctggtctctggtgggcaacattgttgcctgcttactccctaagac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgtgaagggcctggctggtctctggtgggcaacattgttgcctgcttactccctaagac 443
Query: 244 tctccagcacctcagatgggtcctgaagaagtccttaacagatgttcttcctacacagta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctccagcacctcagatgggtcctgaagaagtccttaacagatgttcttcctacacagta 503
Query: 304 ggaaggaaaacacagtatattcctttagcatgagccatgtgaaattgcccttttaaaagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaaggaaaacacagtatattcctttagcatgagccatgtgaaattgcccttttaaaagc 563
Query: 364 aagtcagacacactcaaacacattctaaatttagcttcctatgtaacatgcctcatggat 423
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagtcagacatactcaaacacattctaaatttagcttcctatgtaacatgcctcatggat 623
Query: 424 gtttggatgccttttttttt-aacgcatcctgcaaatgggggaatactcggctgttgtga 482
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 gtttggatgccttttttttttaacacatcctgcaaatgggggaatactcggctgttgtga 683
Query: 483 taccacacttccagctctgctttatcagatagctgtggtttcaaagcatgaacaaggtca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taccacacttccagctctgctttatcagatagctgtggtttcaaagcatgaacaaggtca 743
Query: 543 gcactgtttccaaaaaaagagccctagcctggggtgctgagctcattccctagagctcac 602
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcactgtttccaaaaaaagagcactagcctggggtgctgagctcattccctagagctcac 803
Query: 603 aagaagctgctgagagccccatcctccacttggaaacaaagcctcctagatgttcatagt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aagaagctgctgagagccccatcctccacttggaaacaaagcctcctagatgttcatagt 863
Query: 663 ctccttctcgctaagcaaat 682
||||||||||||||||||||
Sbjct: 864 ctccttctcgctaagcaaat 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1083
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1073
Effective search space: 721056
Effective search space used: 721056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_j19.g1 MSMg01no295_j19.g1 CHROMAT_FILE:
MSMg01no295_j19.g1 PHD_FILE: MSMg01no295_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:35 2005
(301 letters)
>mm_chr5_99988369_99989069
Length = 701
Score = 559 bits (289), Expect = e-164
Identities = 298/301 (99%)
Strand = Plus / Minus
Query: 1 aaagacctgatgcagaaaaattctgtggattagccacacaagtggacagcagtcaaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 aaagacctgatgcagaaaaattctgtggattagccacacaagtggacagcagtcaaaatc 442
Query: 61 tgagggctaaagagcgggtttaccattaggtaggagttctttctcctttctcccttcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagggctaaagagcgggtttaccattaggtaggagttctttctcctttctcccttcctt 382
Query: 121 cccctaaacttcactttgtggggttattatgtgaagtctgccctccaacagagactccca 180
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccctgaacttcactttgtggggttattatgtgaagtctgccctccaacagagactccca 322
Query: 181 gaagggagccatggcacatggtgctcagccgctcctgttattaatcttgcacttatcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagggagccatggcacatggtgctcagccgctcctgttattaatcttgcacttatcctt 262
Query: 241 acatggtcattggacactttctttcactattgcctgcctcagaagaacaggctacaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatggtcattggacactttctttcactattgcctgcctcagaagaacaggctacaaagg 202
Query: 301 a 301
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space: 202064
Effective search space used: 202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
