Query= MSMg01no295_l04.b1 MSMg01no295_l04.b1 CHROMAT_FILE:
MSMg01no295_l04.b1 PHD_FILE: MSMg01no295_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:42 2005
(305 letters)
>mm_chr5_130934492_130935196
Length = 705
Score = 532 bits (275), Expect = e-155
Identities = 296/303 (97%), Gaps = 2/303 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttttgtttggcagcaggggagacagggtcttattatgtagtccaggctgactt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttgtttggcagcaggggagacagggtcttattatgtagtccaggctgactt 263
Query: 64 tggacttgcggtattcctccatacctcactctccaagggtagagggtacacatgagccat 123
|| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaatttgtggtattcctccatacctcactctccaagggtagagggtacacatgagccat 323
Query: 124 cactcttggcctctgttaaattcttttaaaaaagatatatttgtgtgtgtgtatgtgtgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cactcttggcctctgttaaattcttttaaaaaagatatatttgtgtgtgtgtatgtgtgt 383
Query: 184 gtgcatgtgtgcgtgcccgcatgtgcacctgttgtatgtactttattatgagtgtattca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgcatgtgtgcgtgcccgcatgtgcacctgttgtatgtactttattatgagtgtattca 443
Query: 244 tcatgtacacctatgctgagccagaagacatcata-tcccttcctttattgctccctgcc 302
|||||||||||||||| |||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 444 tcatgtacacctatgcagagccagaagacatcagactcc-ttcctttattgctccctgcc 502
Query: 303 tta 305
|||
Sbjct: 503 tta 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no295_l04.g1 MSMg01no295_l04.g1 CHROMAT_FILE:
MSMg01no295_l04.g1 PHD_FILE: MSMg01no295_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:42 2005
(148 letters)
>mm_chr5_131091465_131092012
Length = 548
Score = 263 bits (136), Expect = 3e-75
Identities = 142/144 (98%)
Strand = Plus / Minus
Query: 5 ggattaggactcggcactcctaaggactgttttcaggttgattgtactcttccatcccga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggattaggactcggcactcctaaggactgttttcaggttgattgtactcttccatcccga 289
Query: 65 gcttcttcttcttcagacagcttcctttccttgctaaagtcatatggagcttttgtgtcc 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 288 gcttcttcttcttcagacagcttcctttccttgctaaagtcatatggagcctttgtggcc 229
Query: 125 ccctcttatttcatttctgctact 148
||||||||||||||||||||||||
Sbjct: 228 ccctcttatttcatttctgctact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space: 75600
Effective search space used: 75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
