BAC Information

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BAC

Clone NameMSMg01-295L14
Chromosome5 (Build37)
Map Location 140,700,862 - 140,701,146
singlet/doubletsinglet
Overlap geneMad1l1
Upstream geneUnc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270
Downstream geneFtsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L14.T7 (MSMg01no295_l14.b1)MSMg01-295L14.TJ (MSMg01no295_l14.g1)
ACCAG423538AG423539
length734743
length of high quality
(start - end)
318 (44 - 361)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no295_l14.b1 PHD_FILE: MSMg01no295_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:44 2005CHROMAT_FILE: MSMg01no295_l14.g1 PHD_FILE: MSMg01no295_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCAGTGAAGGGCTGGGGTCATTCCTTAGTCTCAGTGAAGGGTTATC
TACATTGAGTTGGCCTATGGTGTACTGGCTTAATTAAATTCACTGATGTA
AATAGGCCCAGTCCACTGTGGGTGGCACCATTCCCTAGGCAGGGCCTGAT
CATGAGAAATTCAGTGGAGCACAAACAAGCACATGAACATGTAATCATTA
ATTCATTGTCTTCTGACTGGGGGTGAACATGCAATCATTCATTCATCCTC
TTCTGACTGGGGGTGAACATGCAATCATTCATTCATCCTCTTCTGAAGGG
GGTGAACATTTTTTTTTTCCTCCCCCCTCTCCTGACTGGGGGTGAACATG
CAATCATTCATTCACCCCCTTCAGAAAAAAATGAACATGGGATCGGTCGT
TCATCCTCTTCTGAAGGGGGTGAACATGCAACCATTCATTCATCCTCTTC
TGACTGTTGATGTGCTGAGAACAGCTATCCAAATTTTCTCTTGCTTTGAC
TCTCCTGCTATAACTTGGTCTAGAACCTGCAATCTTGATCTAAATCCATC
TAACCTGTCTAACCCTGCTGAGGTGTCCCTGACAATCATGTACTTCATTA
GCCGCCTTATATCCGCAATATTCGGCCCCTCCATACCCTACAAATCCTCC
TCCTGTGCCAGCCCGGCTTCGATTTGCTATCTTT
TCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGTGACCTACCCCAGCTCTGCCC
CTCCTGCAATGTAAATGGCCCTCTATGGGGCAGGCAAGCTCTCAGCTGCT
TCCTGTCCACAGAGATTCACATTCTAGTCCACCTACGGGACCACCTTAGG
CCCACACAAAACCAGAACCAAGGATTGTGAGGGCACGGAACACAGACAGG
ATGCACTTGACCGTTCCACAGAGGGAGCAAGGCTGCCTTTGGAGCCCACA
TCAATCAAGCCCAGCAAGTCTCATGAGTTCTAAGGACATCAGAATTCCCA
GGCACAGGGGTGTTTTTTTCTGCCCCCCCCCCCCATGCCCCTGAATGTCT
TGGTGATGGTTTTTTTGCCACATTGAATAATAAACAAGAAGACCTCGGGG
CGGTCACTTCTGGTTAACAGGGAAGTTTAGCACATGGCCCACTGCGGCAG
TGTGAGCCTAAATCGTCTGCTACACTTCTGTGTCTTTATCCACTACATTT
AGAAATCTCCGAATAACACCCACCGAGAATGTTGTTATAATATCACTTTC
TACTATCACCACTTGAATGCTGCCATTTCACAGTGCATATCCTGAAACCC
TCCGCTAGATATGCATTTTAAGCACTTAATATTCCTATCTTCACAGTATT
ATTACCTATTTCCCTGGAAACCAACCCGTTGGACCTTTGCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l14.g1 MSMg01no295_l14.g1 CHROMAT_FILE:
MSMg01no295_l14.g1 PHD_FILE: MSMg01no295_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:44 2005
         (285 letters)



>mm_chr5_140700662_140701346
          Length = 685

 Score =  543 bits (281), Expect = e-159
 Identities = 284/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggtgacctaccccagctctgcccctcctgcaatgtaaatggccctctatggggcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggtgacctaccccagctctgcccctcctgcaatgtaaatggccctctatggggcaggc 260

                                                                       
Query: 61  aagctctcagctgcttcctgtccacagagattcacattctagtccacctacgggaccacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctctcagctgcttcctgtccacagagattcacattctagtccacctacgggaccacc 320

                                                                       
Query: 121 ttaggcccacacaaaaccagaaccaaggattgtgagggcacggaacacagacaggatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggcccacacaaaaccagaaccaaggattgtgagggcacggaacacagacaggatgca 380

                                                                       
Query: 181 cttgaccgttccacagagggagcaaggctgcctttggagcccacatcaatcaagcccagc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 cttgaccgttccacagagggagcaaggctgcctttggagtccacatcaatcaagcccagc 440

                                                        
Query: 241 aagtctcatgagttctaaggacatcagaattcccaggcacagggg 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtctcatgagttctaaggacatcagaattcccaggcacagggg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)