BAC Information

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BAC

Clone NameMSMg01-295L18
Chromosome5 (Build37)
Map Location 43,791,421 - 43,791,729
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636612, LOC433883, EG665934, Cpeb2
Downstream geneC1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L18.T7 (MSMg01no295_l18.b1)MSMg01-295L18.TJ (MSMg01no295_l18.g1)
ACCAG423545AG423546
length727716
length of high quality
(start - end)
316 (46 - 361)84 (141 - 224)
definitionCHROMAT_FILE: MSMg01no295_l18.b1 PHD_FILE: MSMg01no295_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:45 2005CHROMAT_FILE: MSMg01no295_l18.g1 PHD_FILE: MSMg01no295_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGCAAGCTGCCTACCCATGTACCAGCCAACCCACTCTCTGTGT
CTTCCCAGACTACCCTGCAACTGTATCTTTCCCCTCCTCCTCACTATATC
TTGGCCCACAACCCTGGCAGAAATCTCCTGTCCCACCACAGGCCTCTCTG
GCCACCAGAATTCAAGGCAGAGACCCCCTGCTTAATCAGAAGCCACCCTG
GCCATCAGAAGTCTAACTCCCAACTTGGGTGGAGACCCTCTACTCAACCA
CAGACCACAAGACCAGACAGGAAATAGAAACCAAGGAACAAAACATCCAT
CCAACAAATATAAACTCAGATTCTTNGACGGNAGCCCTATAATCACCCCA
AAGCCTGATGCCAGCGTCCCCCCAAAAATTAAATCNAATAACGGGGGGGG
GGGGGGGAGCCTACTATAGCAATCCCTGAGTATCCAACACAGCTAAAGAA
CAAGAATATAACCTTAAAGCCCACCTCAGGATAATGATAGATTTCCTTAA
CGACGAATGTATAAATATCTTCTAGAAAGCGAAAAAACTCCATGTGCTCC
GATTACCTTAATACCATGATCCATACCATTCAAGATCTTGACCTTGATAT
AGCAATTCATCGTGACCGTCCTACCTTACAAAACCCCGTAACAAGACACT
TCTATTCGCACCGCATCTCTTTATGAG
ATATCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGGAAGGAGAGTCTAAGTGACTA
TTGTGACTATGGGGATTATTTTACCTGTGTAAAAGGAGGGTGGAAGACCT
TCTCACTGCGGCATCATTTTCTGGCCTCTATAAGCAGAGAAGGGGATCAT
TCATGCACTCTGCTAACTATGATGAAATGGGTGGCCTGCAGCCAGCTTTT
TGAATTTCCTGCTGCCTCGACTTTCCTGCCTTTGAACTGTAAGCTGGAAC
AGGTCCTTTATCCCTTGAGCTTTTTTTTTCAAGGCACNNTACAACAGCAA
AAGGAAAGTTTTGNGTAGTTCCAANCCGGGCCCCGGGGNTGNAGNNNGNN
ANANNGAGAAGGGNNCCCCCAAACCNAACNNNCCAAAGGCNNCCGGCCCA
GGGCCNCNCCCAGGCGCACCNCCCGAACCCCGCCAAAAAGAAGCAGAGAA
ANGGCAGCCGACCAAAGCAAACAACAAAGCACCCGAGAACCCCCCGCCAA
AGGAAGAAGAGCGAACAACAAAGAGAACAGGAGCACCGAACAGCCCAAGC
GACCGGAGGGACGCCAGAAGCCCAAAAAGCAGCGCACGCCACGGAAAAAG
GCGCAAAGACCCCCCCAAAAAACAAAGAGAGCGCAAAGCCCCCGACGGAG
CGGAGAACCGGACAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l18.b1 MSMg01no295_l18.b1 CHROMAT_FILE:
MSMg01no295_l18.b1 PHD_FILE: MSMg01no295_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:45 2005
         (316 letters)



>mm_chr5_43791217_43791932
          Length = 716

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggcaagctgcctacccatgtaccagccaacccactctctgtgtcttcccaga 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattccaggcaagctgcctacccatgtaccagccaccccactctctgtgtcttcccaga 264

                                                                       
Query: 65  ctaccctgcaactgtatctttcccctcctcctcactatatcttggcccacaaccctggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaccctgcaactgtatctttcccctcctcctcactatatcttggcccacaaccctggca 324

                                                                       
Query: 125 gaaatctcctgtcccaccacaggcctctctggccaccagaattcaaggcagagaccccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaatctcctgtcccaccacaggcctctctggccaccagaattcaaggcagagaccccct 384

                                                                       
Query: 185 gcttaatcagaagccaccctggccatcagaagtctaactcccaacttgggtggagaccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttaatcagaagccaccctggccatcagaagtctaactcccaacttgggtggagaccct 444

                                                                       
Query: 245 ctactcaaccacagaccacaagaccagacaggaaatagaaaccaaggaacaaaacatcca 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 ctactcaaccacagaccacaagaccagacaggaaacagaaaccaaggaacaaaacatcca 504

                    
Query: 305 tccaacaaa 313
           |||||||||
Sbjct: 505 tccaacaaa 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)