BAC Information

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BAC

Clone NameMSMg01-295M12
Chromosome5 (Build37)
Map Location 46,085,153 - 46,237,403
singlet/doubletdoublet
Overlap geneLcorl, LOC100041576
Upstream geneLdb2, LOC100041481, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295M12.T7 (MSMg01no295_m12.b1)MSMg01-295M12.TJ (MSMg01no295_m12.g1)
ACCAG423579AG423580
length753741
length of high quality
(start - end)		316 (435 - 750)286 (81 - 366)
definitionCHROMAT_FILE: MSMg01no295_m12.b1 PHD_FILE: MSMg01no295_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:48 2005CHROMAT_FILE: MSMg01no295_m12.g1 PHD_FILE: MSMg01no295_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,237,088 - 46,237,403)(46,085,153 - 46,085,436)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATACTAAAAGATAAAAATCTGCCACTGTCGTTATTTTGAATCT
CAAATTGTGGCAGATTTATCTAACCTCAAAGCTCCCCCCATTTTGTGTGT
ATGTGTGTGTGTTGTGTGTATGGTGCAAACATGCATATATTTCTGAACAA
GATAGTCCACATTTATATATTTTATGGTCCCAGATTTGGTATTAGTCACT
TCACTAAAATGACCTTTAATTTTTTTAGGCAAAAAGTAAGTTTAGATACC
AAAACTAAGCAGAAGGTTTTGAATCTGTTTTTAATTAATCCCTGTTTTTT
CATATATAATTTTATATTTTTTCCTCACACTACAAAATAAAACAAGAAAA
AGATTGGCTTAGAAATATTCTATAAAACACATAATGTCTTATATAAGACT
GGTTCAGTAGTAATTGGCACCAAATATGAAATGTTAAATCTTCTGTTAAT
CTACCTCATTAAAACACATTTAGTCTATTATATTTTTATTAAAAATACTA
TCATTTTTGTACTAATCCATGTACAAATTGTTGAGAAGTTGGGTTAGTAC
TACTTATGTTTTACAATTGGGTATTTTATATTTGTGGTACATCTCAATTT
GAAGATTATATTTACTGCAACAGGTAGCAAGTGGACTTAGTTGGACAGTT
TAGTTTTCTTGATTTCCATGGTACCACTTACTTTAAAAATTTCTTCATAA
TAN

ATTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGATTATCAGGTATATA
TGGTAGCCTGTGGATAGCAAATATAACTGCATGAAGATCATTGTTGTTTG
ATTAAAGAAGCCTTCTCCTGGGATTTTTGAAATCATGATGAACTACATTT
ATATTTTGAGCCTTTTGTTTTTCTAGTATATAAGACAGTTATGGGAGGCA
GGGAAGTGTGTCTTTGGGTAAATGTGGAAAAATGATGAAAATAGAAGTGA
TCATGGCAAATGTTTTGCATCCTAGAAGTTACTAAAACAACATCATTTCC
ATTACCATTCTCCCTTTTTATTGACCCGACCACTGAAGTAAAGACTTCTG
TTACTACGTCTGCAAATGTTGGCTTGATAGAAATGCTGTTAATACTGAGG
AGGGAGGACAGTTTAAAGGTGTCTATCTCAAGATTTTTTTTTAATGAAGC
ATATAATAGAACTACAAACTTATCTATAAATTATAATGAAATTCAATTTT
AAAATTCTTTAATGATGTTTGAACACTTAGAAATTTGATGGGTTAATGAT
TTCAGATGCCAACTGCAAGTTAACAGTTTTGTTCTATCTGTATATTTATT
TGCTATTTAGTGACTGCTCTGCTCGAATCACATTTGTTATTAGGAGGATT
ATATTACAAAGGATATTAAGCAAAATATATTAATACCGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_m12.b1 MSMg01no295_m12.b1 CHROMAT_FILE:
MSMg01no295_m12.b1 PHD_FILE: MSMg01no295_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:48 2005
         (316 letters)



>mm_chr5_46236775_46237490
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcttatataagactggttcagtagtaattggcaccaaatatgaaatgttaaatcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgtcttatataagactggttcagtagtaattggcaccaaatatgaaatgttaaatcttct 570

                                                                       
Query: 61  gttaatctacctcattaaaacacatttagtctattatatttttattaaaaatactatcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gttaatctacctcattaaaacacatttagtctattatatttttattaaaaatactatcat 510

                                                                       
Query: 121 ttttgtactaatccatgtacaaattgttgagaagttgggttagtactacttatgttttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttttgtactaatccatgtacaaattgttgagaagttgggttagtactacttatgttttac 450

                                                                       
Query: 181 aattgggtattttatatttgtggtacatctcaatttgaagattatatttactgcaacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aattgggtattttatatttgtggtacatctcaatttgaagattatatttactgcaacagg 390

                                                                       
Query: 241 tagcaagtggacttagttggacagtttagttttcttgatttccatggtaccacttacttt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tagcaagtggacttaattggacagtttagttttcttgatttccatggtaccacttacttt 330

                           
Query: 301 aaaaatttcttcataa 316
           ||||||||||||||||
Sbjct: 329 aaaaatttcttcataa 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no295_m12.g1 MSMg01no295_m12.g1 CHROMAT_FILE:
MSMg01no295_m12.g1 PHD_FILE: MSMg01no295_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:48 2005
         (286 letters)



>mm_chr5_46084953_46085638
          Length = 686

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggattatcaggtatatatggtagcctgtggatagcaaatataactgcatgaagatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggattatcaggtatatatggtagcctgtggatagcaaatataactgcatgaagatca 260

                                                                       
Query: 61  ttgttgtttgattaaagaagccttctcctgggatttttgaaatcatgatgaactacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttgtttgattaaagaagccttctcctgggatttttgaaatcatgatgaactacattt 320

                                                                       
Query: 121 atattttgagccttttgtttttctagtatataagacagttatgggaggcagggaagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattttgagccttttgtttttctagtatataagacagttatgggaggcagggaagtgtg 380

                                                                       
Query: 181 tctttgggtaaatgtggaaaaatgatgaaaatagaagtgatcatggcaaatgttttgcat 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttgggtaaatgtggagaaatgatgaaaatagaagtgatcatggcaaatgttttgcat 440

                                                       
Query: 241 cctagaagttactaaaacaacatcatttccattaccattctccc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagaagttactaaaacaacatcatttccattaccattctccc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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