BAC Information

Click to search

BAC

Clone NameMSMg01-296B06
Chromosome5 (Build37)
Map Location 91,271,718 - 91,271,956
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts3, EG665733, Cox18, Ankrd17, Alb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15
Downstream geneCxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296B06.T7 (MSMg01no296_b06.b1)MSMg01-296B06.TJ (MSMg01no296_b06.g1)
ACCAG423790AG423791
length780821
length of high quality
(start - end)
237 (127 - 363)239 (75 - 313)
definitionCHROMAT_FILE: MSMg01no296_b06.b1 PHD_FILE: MSMg01no296_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:11 2005CHROMAT_FILE: MSMg01no296_b06.g1 PHD_FILE: MSMg01no296_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTATTGGG
ATTTTCTGAAGTCCGCTTTCTTGCGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTGAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTTCGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACTGCACAAGCTATTGCT
GTTCTGTTCAGGAATTTTTCTCCTGTGCCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATTTTTTTCCCCCTCCCCGCCCCCATGTGAAGTTCCT
TGATCCGCTTAGATTTCCCCCCACCACAAAAAGATAAATATGGATCGATT
CGTATTCTTCTACACGATATTTACCTTTTGTGCCAGCCCCCCTTTGTTGA
AAATGCTGCTTTTCTTCCACTGGATGGCCCTAGATTCCCTTGTCGATTTT
CAGCGTATTTTACTCGTTTGTTTTTCCTTTCCTGCTCTTCTCTCTTCTCT
TCCTCTGTCCCAACTTGTTCGTCTCTTTTTCCTTTATTATGTTTCTTTTT
CTCCCTATTTCCTTTCTCCTCCCCTCTCTTACCCCCGCCTTCTCCTATTC
CCTTTCCCACCGTCCCCTTCACCCCGTGATATCCCGCCCTTCAGGACTTT
CCACACCTTTTTTGCGTTTTTATTCTTTTT
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAGTCATGCCATTTGGACAGT
TTTGCTTCTCAGATTTTTCCCTATTTTGCCTAGATATGTGTTACATAACA
ATTCAAAGGAAAAGCCTACAAAAAGAGCCAATATCCCCAGGGAAGGAGAG
GCTGGGGGAATTTAAAATTACAGAAGATTAAAAAACTGAACTCAAATGTA
GGATCTGTTTGGCTCAAGAAAGACTGTGTGTATGCGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTTTGCCTGTTCCCCCCCATCCTTTTC
AGCCTGGAATTTTTTATATTTTCCCCCCCCCCCCCCCCCGGAANGTTTTT
GCGATTATTTTTTCTTCCCCCCCCCTCCAAAAAAAAAAAAAAATTATTTC
GCGGGGGGGGGGTTTTTCCCCTCTCTCTTCCCCCCTCACTTTATTTTTTC
CCCCCCCCTTATATTTCTCCCCCCCCACCTCATATATCTTCTTTTCTTCC
CATCTCTTTTTTCTCCCTCCCCTTCCCACCCCCTTTTTTTTTTCATTCCC
CTTATTACTACTCCCCATTATTATGTTTTTCTCCCCCTTTTACCACCCTT
TTATCCCTTCTCTTACAGCTACCCCCGCCGGTGTTTTTTTCTTTTCCACC
CTCTTCATTTTCTCCTCCCTCCTCCACCTCCCTTCTTATTTTCTCCCCTC
CTCTTATTCCACCCTTACTTTCCTATTTCTTATCCACTTTCCTCTCCAGC
TACTTTTCACCTCTTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_b06.g1 MSMg01no296_b06.g1 CHROMAT_FILE:
MSMg01no296_b06.g1 PHD_FILE: MSMg01no296_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:11 2005
         (239 letters)



>mm_chr5_91271518_91272156
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccaagtcatgccatttggacagttttgcttctcagatttttccctattttgcctaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcccaagtcatgccatttggacagttttgcttctcagatttttccctattttgcctaga 260

                                                                       
Query: 61  tatgtgttacataacaattcaaaggaaaagcctacaaaaagagccaatatccccagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtgttacataacaattcaaaggaaaagcctacaaaaagagccaatatccccagggaa 320

                                                                       
Query: 121 ggagaggctgggggaatttaaaattacagaagattaaaaaactgaactcaaatgtaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaggctgggggaatttaaaattacagaagattaaaaaactgaactcaaatgtaggat 380

                                                                      
Query: 181 ctgtttggctcaagaaagactgtgtgtatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgt 239
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ctgtttggctcaagaaagactgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)