MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-296D05
Chromosome	5 (Build37)
Map Location	68,538,336 - 68,538,619
singlet/doublet	singlet
Overlap gene	AY616753
Upstream gene	Tmem33, Slc30a9, EG666938, C330024D21Rik, D830007B15Rik, Atp8a1, LOC100042458, EG330097, EG666977
Downstream gene	LOC666996, Kctd8
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tmem33 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67878 MGI:1915128
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Slc30a9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109108 MGI:1923690
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666938 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666938 MGI:3648414
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	C330024D21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320479 MGI:2444116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	D830007B15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330096 MGI:3041225
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atp8a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11980 MGI:1330848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042458 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	EG330097 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330097 MGI:3645064
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	EG666977 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666977 MGI:3647963
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 222 ESTs, 3 Proteins pseudo : _no_value

name	AY616753 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433899 MGI:3577767
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666996 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666996
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 32 Proteins pseudo : _no_value

name	Kctd8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243043 MGI:2443804
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533247 GeneID:67878 MGI:1915128
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 33 transcript_id : NM_028975.3

name	Tmem33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533250 GeneID:67878 MGI:1915128
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 33 transcript_id : NM_030108.1

name	Slc30a9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125660457 GeneID:109108 MGI:1923690
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 30 (zinc transporter), member 9 transcript_id : NM_178651.3

name	EG666938 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253924 GeneID:666938 MGI:3648414
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : predicted gene, EG666938 transcript_id : XM_001477289.1

name	C330024D21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253926 GeneID:320479 MGI:2444116
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : RIKEN cDNA C330024D21 gene transcript_id : XM_001477333.1

name	D830007B15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361251 GeneID:330096 MGI:3041225
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D830007B15 gene transcript_id : NM_001033415.2

name	Atp8a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781801 GeneID:11980 MGI:1330848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 transcript_id : NM_001038999.1

name	Atp8a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781809 GeneID:11980 MGI:1330848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 transcript_id : NM_009727.2

name	LOC100042458 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253946 GeneID:100042458
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100042458 transcript_id : XM_001478758.1

name	AY616753 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:65301144 GeneID:433899 MGI:3577767
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence, AY616753 transcript_id : NM_001018019.1

name	Kctd8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:65301476 GeneID:243043 MGI:2443804
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : potassium channel tetramerisation domain containing 8 transcript_id : NM_175519.4

name	Tmem33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68533251 GeneID:67878 MGI:1915128
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : transmembrane protein 33 isoform 2 protein_id : NP_084384.1

name	Tmem33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22267448 CCDS:CCDS19317.1 GeneID:67878 MGI:1915128
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : transmembrane protein 33 isoform 1 protein_id : NP_083251.2

name	Slc30a9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125660458 GeneID:109108 MGI:1923690
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0008324 - cation transporter activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006812 - cation transport [Evidence IEA]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 note : HUEL-like; C4orf1-like; GRIP1-associated coactivator 1 product : solute carrier family 30 (zinc transporter), member 9 protein_id : NP_848766.2

name	EG666938 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253925 GeneID:666938 MGI:3648414
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477339.1

name	C330024D21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253927 GeneID:320479 MGI:2444116
definition	codon_start : 1 product : hypothetical protein LOC320479 protein_id : XP_001477383.1

name	D830007B15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85986585 CCDS:CCDS19318.1 GeneID:330096 MGI:3041225
definition	codon_start : 1 product : hypothetical protein LOC330096 protein_id : NP_001028587.1

name	Atp8a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781802 GeneID:11980 MGI:1330848
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; ATPase 8A1, p type; ATPase 8A1, aminophospholipid transporter (APLT), class I product : ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 isoform a protein_id : NP_001034088.1

name	Atp8a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7106257 GeneID:11980 MGI:1330848
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATPase activity [Evidence IEA]; GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016820 - hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004012 - phospholipid-translocating ATPase activity [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; ATPase 8A1, p type; ATPase 8A1, aminophospholipid transporter (APLT), class I product : ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 isoform b protein_id : NP_033857.1

name	LOC100042458 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253947 GeneID:100042458
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478808.1

name	AY616753 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:65301145 CCDS:CCDS19319.1 GeneID:433899 MGI:3577767
definition	GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA] GO_process : GO:0045454 - cell redox homeostasis [Evidence IEA] codon_start : 1 product : glutaredoxin cysteine-rich 1 protein protein_id : NP_001018019.1

name	Kctd8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:65301477 CCDS:CCDS19320.1 GeneID:243043 MGI:2443804
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0008076 - voltage-gated potassium channel complex [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005249 - voltage-gated potassium channel activity [Evidence IEA] GO_process : GO:0006813 - potassium ion transport [Evidence IEA] codon_start : 1 product : potassium channel tetramerisation domain containing 8 protein_id : NP_780728.3

name	LOC666996 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666996
definition	number : 4 pseudo : _no_value

name	LOC666996 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666996
definition	number : 3 pseudo : _no_value

name	LOC666996 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666996
definition	number : 2 pseudo : _no_value

name	LOC666996 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666996
definition	number : 1 pseudo : _no_value

name	EG330097 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94374794 GeneID:330097 MGI:3645064
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG330097 transcript_id : XR_002346.1

name	EG666977 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149253948 GeneID:666977 MGI:3647963
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 222 ESTs, 3 Proteins product : predicted gene, EG666977 pseudo : _no_value transcript_id : XR_033876.1

clone name	MSMg01-418E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547P16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-216M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-330C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-403D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-189P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231E04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502N21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-190G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-320P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161P20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-165N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138H16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298O07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321A07
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-296D05.T7 (MSMg01no296_d05.b1)	MSMg01-296D05.TJ (MSMg01no296_d05.g1)
ACC	AG423880	AG423881
length	729	723
length of high quality (start - end)	320 (45 - 364)	286 (77 - 362)
definition	CHROMAT_FILE: MSMg01no296_d05.b1 PHD_FILE: MSMg01no296_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:20 2005	CHROMAT_FILE: MSMg01no296_d05.g1 PHD_FILE: MSMg01no296_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:20 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTT CAGCATCCTTAATCAACAGGGAAATGCAAATCAAAACAACCCTTAGATTC CACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAG ATGTTGATGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG TTTCCAAGCTTGTTCAACCAATCTGGAAATCAGTCTGGCATTTTCTCAGA AAATTGGACATAGTACTACTGGAGGATCCCACAATACCTCTCCTGGGCAT ATATCCAGAATATGTTCCCAACTGGCAACAAGGACACATGCTCCACTATG TTCATAGCAGCCTTATTTACACTAGCCAGAAGCTGAAAAGAACCCAGATG CCCCTCAACATCGGAATGGATACAGGAAATGTGGTACATTTACACAATGG AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAA TGGATGGACCTGGAGGGTATCACCCCGAGTGAGGTAACCCAATCACAAAA TAACTCACATGTTATGTACTCACTGATAAGTAGATTTTAGCCTAGAAACT TAGGATACCCAATATATAAAATACAATTTGCAAAATACATGACACTCAAG AAGAACAAAGACCAAAGTGTGGATACTTN	TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCAATGAATGGAATTTTAATT GACATTTTGATCATCTAATTGTATTTCTCAATTACTATCTCAATGAGAGC CTTCCTCAAATATTTTTTTCTGCTGACTGATTAAATACCCATACTGTTCC AGAAAAGCAATTGACTAAATTTTTCAGTTTTCAGCAATGTTGTTAACTAA TTGTTCTTAGGTTTTTATTTGCTTCTGACTCTTCAGGGAATCCTCACTAA AAGCTAGATAAATCTCCCATAATAAACAACATTTCAGCCATCTTACAGCT GAACTGAAAATTTCCTTATTCTCCCCCCCCCGCTGAAAATTCATGTGATT TTTCTTCAGATACTCACAGCCAACCAAAAAAATAAACCCTGGGACCGCAG GGGAAGAGTTCAGGGAAGGACTGAAGGAGCTGAATGGGATTACAGTCCCA TAGTAAAAACAATATCAACTAACCAGATCCCACAAAGCTCCCAGGGACTA AACCACCAACCAAAGAATACACATGGAGGGACCCATGGCTCTAGCTACAT ATGTAGCAGAAGATTGCCTTATCTGTCATCAGTGGGAGGGGAGGTCCTTG GTTCTGTGGAGGCTTGATACCCCAGTGTAAGGGGATGCTAGAGTGGTGAG GCAGGAATGCGGGTGTGTTTTTT
quality values	Open. Hide. 6 6 7 6 6 6 13 14 37 39 33 32 30 28 28 37 23 21 10 10 10 21 21 59 30 30 31 31 31 35 44 53 50 50 50 57 57 57 57 42 42 34 24 26 42 43 57 53 47 47 47 47 68 51 51 50 50 50 43 50 50 50 50 40 48 48 48 50 48 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 51 50 68 68 68 68 68 50 50 50 50 50 50 50 50 50 50 68 68 68 68 68 68 68 51 51 50 50 50 50 68 50 50 57 50 50 50 57 57 57 68 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 57 48 48 48 46 46 48 48 48 68 59 59 68 59 59 59 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 37 25 13 8 8 6 11 8 8 8 8 16 11 19 28 15 21 13 10 10 10 10 11 13 14 15 19 29 32 43 43 59 57 57 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 48 48 42 29 14 9 9 9 9 9 24 24 44 44 43 43 43 43 43 43 47 59 57 59 59 68 57 57 57 47 42 35 35 31 43 43 44 48 48 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 68 68 68 68 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 59 59 59 59 54 57 57 59 57 57 59 57 57 57 57 57 57 59 57 57 57 57 57 57 57 57 57 57 57 68 68 57 57 59 59 59 59 59 68 68 59 57 57 57 57 43 43 59 59 59 57 43 43 47 59 59 54 54 54 59 57 57 57 57 57 57 57 57 54 57 57 54 48 54 54 43 43 43 47 47 46 48 43 57 57 59 47 48 48 48 57 57 48 57 57 48 48 59 39 37 30 39 39 37 29 25 24 22 18 25 35 39 39 41 41 41 39 37 32 22 22 29 30 32 29 34 41 39 39 39 40 39 47 41 30 28 28 32 31 31 31 25 25 43 59 59 37 35 31 34 28 30 23 23 14 28 16 22 9 9 9 23 25 17 17 17 25 22 31 32 31 29 32 32 24 20 24 14 15 10 11 13 23 23 22 25 28 22 20 24 22 14 13 12 3 0	Open. Hide. 6 6 10 10 11 8 8 6 8 7 7 9 9 16 18 37 37 44 44 44 47 47 47 47 48 48 48 53 57 50 50 53 53 48 57 48 48 40 28 22 26 26 36 29 43 36 43 44 44 54 54 54 54 54 54 57 57 54 54 54 54 36 48 41 41 41 48 59 57 57 50 50 51 50 57 57 68 68 48 48 46 46 46 46 57 57 57 57 57 50 50 50 50 50 51 68 59 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 57 57 57 57 57 68 57 57 57 57 57 57 57 68 68 59 68 68 68 68 68 57 68 57 57 57 57 57 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 59 59 59 59 57 59 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 59 59 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 59 52 59 59 68 59 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 59 59 59 57 57 59 59 59 59 59 59 59 59 68 68 54 48 48 47 43 43 43 36 36 36 43 43 57 59 68 57 50 50 48 50 50 57 59 59 59 59 57 57 57 57 57 50 59 48 50 50 50 46 41 32 21 15 11 12 12 6 6 6 6 6 6 8 10 12 9 9 8 9 9 11 11 9 10 8 10 10 10 12 18 28 32 41 48 48 48 48 48 48 57 57 57 57 57 59 59 59 59 57 57 57 50 50 50 59 59 41 41 23 23 11 12 12 13 23 22 13 12 12 10 11 12 15 15 17 10 10 10 13 15 17 28 34 36 34 34 23 23 22 19 13 13 13 13 18 18 30 28 43 43 47 59 57 57 57 48 57 57 48 48 48 57 59 59 57 50 48 48 48 46 59 59 47 41 41 43 41 41 41 43 41 41 47 47 47 48 48 48 48 57 48 57 57 57 57 57 59 59 59 59 57 57 57 57 57 57 59 57 57 57 57 68 68 68 68 57 46 43 40 40 43 46 48 57 48 48 43 43 43 59 59 59 48 48 48 47 42 37 37 37 37 39 39 39 39 43 43 43 43 48 48 54 48 48 57 57 57 57 59 59 57 57 57 43 36 25 28 25 34 34 50 50 33 37 37 37 37 37 59 41 37 29 34 30 37 37 39 47 47 32 37 30 39 37 43 59 43 43 36 35 35 39 39 34 21 24 19 26 26 37 37 47 48 48 48 48 48 48 43 43 34 33 21 21 16 21 21 30 32 34 32 30 28 28 34 33 37 39 36 36 20 19 19 15 15 23 28 30 30 28 25 24 28 30 25 25 31 37 43 59 47 41 41 48 47 30 26 14 14 14 22 22 12 12 13 23 19 14 15 25 31 28 28 14 15 15 20 19 20 20 24 24 28 28 24 24 31 28 16 14 7 10 7 7 7 10 15 19 21 16 13 8 8 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no296_d05.g1 MSMg01no296_d05.g1 CHROMAT_FILE:
MSMg01no296_d05.g1 PHD_FILE: MSMg01no296_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:20 2005
         (286 letters)



>mm_chr5_68538136_68538821
          Length = 686

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccaatgaatggaattttaattgacattttgatcatctaattgtatttctcaattact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccaatgaatggaattttaattgacattttgatcatctaattgtatttctcaattact 260

                                                                       
Query: 61  atctcaatgagagccttcctcaaatatttttttctgctgactgattaaatacccatactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctcaatgagagccttcctcaaatatttttttctgctgactgattaaatacccatactg 320

                                                                       
Query: 121 ttccagaaaagcaattgactaaatttttcagttttcagcaatgttgttaactaattgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccagaaaagcaattgactaaatttttcagttttcagcaatgttgttaactaattgttc 380

                                                                       
Query: 181 ttaggtttttatttgcttctgactcttcagggaatcctcactaaaagctagataaatctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaggtttttatttgcttctgactcttcagggaatcctcactaaaagctagataaatctc 440

                                                       
Query: 241 ccataataaacaacatttcagccatcttacagctgaactgaaaa 284
           ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ccataataaacaacatttcagccatcttacaactgaactgaaaa 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information