Query= MSMg01no296_f16.b1 MSMg01no296_f16.b1 CHROMAT_FILE:
MSMg01no296_f16.b1 PHD_FILE: MSMg01no296_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:31 2005
(318 letters)
>mm_chr5_89351114_89351831
Length = 718
Score = 586 bits (303), Expect = e-172
Identities = 309/311 (99%)
Strand = Plus / Minus
Query: 5 gaattcagcatctttaatctttacctggactccagcacagtaaaagtgcctgccacaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcagcatctttaatctttacctggactccagcacagtaaaagtgcctgccacaaag 456
Query: 65 agaaatctatacccgcctgtattaaacagctctgttgctaaggtctacctcatcttctct 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 agaaatctataccagcctgtattaaacagctctgttgctaaggtctacctcatcttctct 396
Query: 125 gcagctcaagactcagggggactccccaaaaccctcacctgcctgatttgtctcagcaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gcagctcaagactcagggggactccccaaaaccctcacctgcctgatttgtctcagcaat 336
Query: 185 gtagtgcttagtgtccgaagatgtgaatgccaacggggaatcccggtctgttagtatcgc 244
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtagtgcttagtgtccgaagacgtgaatgccaacggggaatcccggtctgttagtatcgc 276
Query: 245 tgcctgtggttgaaatctatacctcaaatagtaatgcaatatctttcaagttgatttcaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgcctgtggttgaaatctatacctcaaatagtaatgcaatatctttcaagttgatttcaa 216
Query: 305 aattgagtttt 315
|||||||||||
Sbjct: 215 aattgagtttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_f16.g1 MSMg01no296_f16.g1 CHROMAT_FILE:
MSMg01no296_f16.g1 PHD_FILE: MSMg01no296_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:31 2005
(281 letters)
>mm_chr5_89172015_89172696
Length = 682
Score = 522 bits (270), Expect = e-153
Identities = 279/282 (98%), Gaps = 1/282 (0%)
Strand = Plus / Plus
Query: 1 ctattaatttttagatatttaagatgacttattcagtaaagaagtatagattccattgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctattaatttttagatatttaagatgacttattcagtaaagaagtatagattccattgat 260
Query: 61 agtatgtgtttaaataatcaagtatttccttcccctctttttttt-actcacagtggtag 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 agtatgtgtttaaataatcaagtatttccttcccctctttttttttactcacagtggtag 320
Query: 120 tcgctcttctaaaacttttaaaccaaagaagaacataccagaggggtctcaccagtatga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgctcttctaaaacttttaaaccaaagaagaacataccagaggggtctcaccagtatga 380
Query: 180 actcttaaagcatgcggaagccacactgggcagcggcaacctgcggatggctgtcatgct 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 actcttaaagcatgcggaagccacactgggcagcggcaacctacggatggctgtcatgct 440
Query: 240 tcctgagggagaggatctgaatgagtgggttgcagttaacag 281
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccgagggagaggatctgaatgagtgggttgcagttaacag 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space: 183056
Effective search space used: 183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
