Query= MSMg01no298_n15.b1 MSMg01no298_n15.b1 CHROMAT_FILE:
MSMg01no298_n15.b1 PHD_FILE: MSMg01no298_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:37 2005
(397 letters)
>mm_chr5_42015343_42016139
Length = 797
Score = 652 bits (337), Expect = 0.0
Identities = 375/397 (94%), Gaps = 18/397 (4%)
Strand = Plus / Minus
Query: 1 ctgcacacgtcccttagccaggaatcctcctttcttgtcctctcctctcccctcccatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgcacacgtcccttagccaggaatcctcctttcttgtcctctcctctcccctcccatac 552
Query: 61 cctcttctttccctctcccttcttccacattgtctgcttcctgctctgtcttggtcataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cctcttctttccctctcccttcttccacattgtctgcttcctgctctgtcttggtcataa 492
Query: 121 ttgttctgtgttttgtgcaaaggcccagtgctcagtgcatacttgttactaaagtaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttgttctgtgttttgtgcaaaggcccagtgctcagtgcatacttgttactaaagtaggaa 432
Query: 181 tgacccccctacatcccctcagtccacacatatgtgaagctcttctaagctccatggcat 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgacccccctacatccccacagtccacacatatgtgaagctcttctaagctccatggcat 372
Query: 241 gagcaccaatgcctctaggatgcttccttcccctttctgtcctgcagcacaaggcacaag 300
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 371 gagcaccagtgcctctaggatgcttccttccccttcctgtcctgcagcacaaggcacaag 312
Query: 301 ttttctctgtgagccgtctatcagggttgtttttttttttttttgttgttgttgttgttg 360
|||||||||||||||||||||||||||| |||||||||||||| |||| ||
Sbjct: 311 ttttctctgtgagccgtctatcagggtt--------ttttttttgttgtt--tgtt--tg 264
Query: 361 tttttttttgtttgtttgtttttggcttgttttgggg 397
||| |||||||||||||||| |||||||||||
Sbjct: 263 ttt------gtttgtttgtttttggtttgttttgggg 233
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_n15.g1 MSMg01no298_n15.g1 CHROMAT_FILE:
MSMg01no298_n15.g1 PHD_FILE: MSMg01no298_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:37 2005
(377 letters)
>mm_chr5_41835589_41836364
Length = 776
Score = 669 bits (346), Expect = 0.0
Identities = 370/378 (97%), Gaps = 5/378 (1%)
Strand = Plus / Plus
Query: 1 aattctctggtctccttgggaaattggaatca-cagtggagataaatttgtttatcataa 59
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct: 201 aattctctggtctccttgggaaattggaat-agcagtgaagataaatttgtttatcataa 259
Query: 60 atcctggggttctgaacatttcagagaaaggtttgaaactcacagataaaattccatagc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atcctggggttctgaacatttcagagaaaggtttgaaactcacagataaaattccatagc 319
Query: 120 cagcattccatgggttgtcataaagccacacagctctggataactacctaaatcagacgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagcattccatgggttgtcataaagccacacagctctggataactacctaaatcagacgc 379
Query: 180 tctcaaggcacatatctggccacttctggtcatctcagtttaagcacccttttgtagcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctcaaggcacatatctggccacttctggtcatctcagtttaagcacccttttgtagcaa 439
Query: 240 agtccctttcctctcagtgcacattctggcaactgtttgcacctcctggaagtttccctt 299
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 agtccctttccactcagtgcacattctggcaactgtttgcacctcctg-aagtttccctt 498
Query: 300 taaccttgcaaatctctatccc-tccagaagctgcatcagccttcaaaaaaccaaactgg 358
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 499 taaccttgcaaatctct-tcccctccagaagttgcatcagccttcaaaaaaccaaactgg 557
Query: 359 gggtgggggtgggggtgg 376
||||||||||||||||||
Sbjct: 558 gggtgggggtgggggtgg 575
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 776
Length adjustment: 9
Effective length of query: 368
Effective length of database: 767
Effective search space: 282256
Effective search space used: 282256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
