MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-299H11
Chromosome	5 (Build37)
Map Location	111,293,894 - 111,294,235
singlet/doublet	singlet
Overlap gene	Chek2
Upstream gene	LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb
Downstream gene	Ttc28, Pitpnb, Mn1
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC667243 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667243
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Plcxd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:403178 MGI:2685422
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gtpbp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107999 MGI:1306825
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC675812 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675812
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 2 Proteins

name	Chfr (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231600 MGI:2444898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Golga3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269682 MGI:96958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D5Ertd585e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71782 MGI:1261856
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pgam5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72542 MGI:1919792
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pxmp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19301 MGI:107487
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pole (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18973 MGI:1196391
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	P2rx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231602 MGI:2665170
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1679 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381667 MGI:2686525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410025L10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381668 MGI:1920907
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Galnt9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231605 MGI:2677965
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Noc4l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100608 MGI:2140843
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ddx51 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69663 MGI:1916913
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ep400 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75560 MGI:1276124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pus1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56361 MGI:1929237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Ulk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22241 MGI:1270126
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hscb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100900 MGI:2141135
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Chek2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50883 MGI:1355321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ttc28 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:209683 MGI:2140873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 192 ESTs, 1 Protein

name	Pitpnb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56305 MGI:1927542
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433938 MGI:1261813
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Plcxd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46402312 GeneID:403178 MGI:2685422
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol-specific phospholipase C, X domain containing 1 transcript_id : NM_207279.1

name	Gtpbp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365016 GeneID:107999 MGI:1306825
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP binding protein 6 (putative) transcript_id : NM_145147.3

name	LOC675812 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149254168 GeneID:675812
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 2 Proteins product : similar to zinc finger protein 605 transcript_id : XM_001479199.1

name	Chfr (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377331 GeneID:231600 MGI:2444898
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : checkpoint with forkhead and ring finger domains transcript_id : NM_172717.2

name	Golga3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982329 GeneID:269682 MGI:96958
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : golgi autoantigen, golgin subfamily a, 3 transcript_id : NM_008146.3

name	D5Ertd585e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40789238 GeneID:71782 MGI:1261856
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 5, ERATO Doi 585, expressed transcript_id : NM_027922.1

name	Pgam5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349845 GeneID:72542 MGI:1919792
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphoglycerate mutase family member 5 transcript_id : NM_028273.2

name	Pxmp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112421057 GeneID:19301 MGI:107487
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisomal membrane protein 2 transcript_id : NM_008993.2

name	Pole (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755123 GeneID:18973 MGI:1196391
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polymerase (DNA directed), epsilon transcript_id : NM_011132.1

name	P2rx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354790 GeneID:231602 MGI:2665170
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2X, ligand-gated ion channel, 2 transcript_id : NM_153400.3

name	Gm1679 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371683 GeneID:381667 MGI:2686525
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1679, (NCBI) transcript_id : NM_001033459.2

name	2410025L10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:125347475 GeneID:381668 MGI:1920907
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410025L10 gene transcript_id : NM_028596.2

name	Galnt9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38142485 GeneID:231605 MGI:2677965
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 transcript_id : NM_198306.1

name	Noc4l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981993 GeneID:100608 MGI:2140843
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleolar complex associated 4 homolog (S. cerevisiae) transcript_id : NM_153570.2

name	Ddx51 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40538824 GeneID:69663 MGI:1916913
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 transcript_id : NM_027156.2

name	Ep400 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27414492 GeneID:75560 MGI:1276124
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : E1A binding protein p400 transcript_id : NM_029337.1

name	Pus1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91982769 GeneID:56361 MGI:1929237
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pseudouridine synthase 1 transcript_id : NM_001025562.2

name	Pus1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91982773 GeneID:56361 MGI:1929237
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pseudouridine synthase 1 transcript_id : NM_019700.4

name	Pus1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91982763 GeneID:56361 MGI:1929237
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pseudouridine synthase 1 transcript_id : NM_001025561.2

name	Ulk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254401 GeneID:22241 MGI:1270126
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Unc-51 like kinase 1 (C. elegans) transcript_id : NM_009469.3

name	Hscb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956361 GeneID:100900 MGI:2141135
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : HscB iron-sulfur cluster co-chaperone homolog (E. coli) transcript_id : NM_153571.1

name	Chek2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377787 GeneID:50883 MGI:1355321
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CHK2 checkpoint homolog (S. pombe) transcript_id : NM_016681.3

name	Ttc28 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149254130 GeneID:209683 MGI:2140873
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 192 ESTs, 1 Protein product : tetratricopeptide repeat domain 28 transcript_id : XM_001481308.1

name	Pitpnb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802542 GeneID:56305 MGI:1927542
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol transfer protein, beta transcript_id : NM_019640.3

name	Mn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486984 GeneID:433938 MGI:1261813
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : meningioma 1 transcript_id : NM_001081235.1

name	Plcxd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46402313 GeneID:403178 MGI:2685422
definition	GO_function : GO:0004629 - phospholipase C activity [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 product : phosphatidylinositol-specific phospholipase C, X domain containing 1 protein_id : NP_997162.1

name	Gtpbp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956274 GeneID:107999 MGI:1306825
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA] codon_start : 1 note : pseudoautosomal GTP binding protein-like, like product : GTP binding protein 6 (putative) protein_id : NP_660129.1

name	LOC675812 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149254169 GeneID:675812
definition	codon_start : 1 product : similar to zinc finger protein 605 protein_id : XP_001479249.1

name	Chfr (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370050 CCDS:CCDS19522.1 GeneID:231600 MGI:2444898
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004842 - ubiquitin-protein ligase activity [Evidence IMP]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0000278 - mitotic cell cycle [Evidence IMP]; GO:0000209 - protein polyubiquitination [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IDA] codon_start : 1 exception : mismatches in translation product : checkpoint with forkhead and ring finger domains protein_id : NP_766305.1

name	Golga3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982330 GeneID:269682 MGI:96958
definition	GO_component : GO:0005793 - ER-Golgi intermediate compartment [Evidence IDA]; GO:0000139 - Golgi membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA] codon_start : 1 note : Mea2/Golga3 product : Golgi autoantigen, golgin subfamily a, 3 protein_id : NP_032172.3

name	D5Ertd585e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40789239 GeneID:71782 MGI:1261856
definition	codon_start : 1 product : hypothetical protein LOC71782 protein_id : NP_082198.1

name	Pgam5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037293 CCDS:CCDS19523.1 GeneID:72542 MGI:1919792
definition	codon_start : 1 exception : mismatches in translation product : phosphoglycerate mutase family member 5 protein_id : NP_082549.1

name	Pxmp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112421058 CCDS:CCDS19524.1 GeneID:19301 MGI:107487
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005777 - peroxisome [Evidence IEA] GO_process : GO:0007031 - peroxisome organization and biogenesis [Evidence IEA] codon_start : 1 note : peroxisomal membrane protein 2, 22 kDa product : peroxisomal membrane protein 2 protein_id : NP_033019.2

name	Pole (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755124 CCDS:CCDS19525.1 GeneID:18973 MGI:1196391
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA] codon_start : 1 exception : mismatches in translation note : DNA polymerase epsilon; pol-epsilon product : DNA polymerase epsilon catalytic subunit protein_id : NP_035262.1

name	P2rx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27544935 GeneID:231602 MGI:2665170
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004931 - ATP-gated cation channel activity [Evidence IDA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : purinergic receptor P2X, ligand-gated ion channel, 2 protein_id : NP_700449.2

name	Gm1679 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701975 GeneID:381667 MGI:2686525
definition	codon_start : 1 product : hypothetical protein LOC381667 protein_id : NP_001028631.1

name	2410025L10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:125347476 GeneID:381668 MGI:1920907
definition	codon_start : 1 product : hypothetical protein LOC381668 protein_id : NP_082872.2

name	Galnt9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38142486 GeneID:231605 MGI:2677965
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 protein_id : NP_938048.1

name	Noc4l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981994 CCDS:CCDS19527.1 GeneID:100608 MGI:2140843
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0005732 - small nucleolar ribonucleoprotein complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0030515 - snoRNA binding [Evidence ISS] GO_process : GO:0006365 - 35S primary transcript processing [Evidence ISS] codon_start : 1 product : nucleolar complex associated 4 homolog protein_id : NP_705798.2

name	Ddx51 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40538825 CCDS:CCDS19528.1 GeneID:69663 MGI:1916913
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0007046 - ribosome biogenesis [Evidence IEA]; GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 product : DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 protein_id : NP_081432.2

name	Ep400 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27414493 CCDS:CCDS19529.1 GeneID:75560 MGI:1276124
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0016568 - chromatin modification [Evidence IEA] codon_start : 1 exception : mismatches in translation product : Domino protein_id : NP_083613.1

name	Pus1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906470 CCDS:CCDS19531.1 GeneID:56361 MGI:1929237
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0030374 - ligand-dependent nuclear receptor transcription coactivator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004730 - pseudouridylate synthase activity [Evidence IEA]; GO:0016439 - tRNA-pseudouridine synthase activity [Evidence IMP] [Evidence IDA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0008033 - tRNA processing [Evidence IEA]; GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : pseudouridine synthase 1 isoform 2 protein_id : NP_062674.2

name	Pus1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906468 CCDS:CCDS19530.1 GeneID:56361 MGI:1929237
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0030374 - ligand-dependent nuclear receptor transcription coactivator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004730 - pseudouridylate synthase activity [Evidence IEA]; GO:0016439 - tRNA-pseudouridine synthase activity [Evidence IMP] [Evidence IDA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0008033 - tRNA processing [Evidence IEA]; GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : pseudouridine synthase 1 isoform 1 protein_id : NP_001020732.1

name	Pus1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70906472 GeneID:56361 MGI:1929237
definition	GO_component : GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016853 - isomerase activity [Evidence IEA]; GO:0030374 - ligand-dependent nuclear receptor transcription coactivator activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004730 - pseudouridylate synthase activity [Evidence IEA]; GO:0016439 - tRNA-pseudouridine synthase activity [Evidence IMP] [Evidence IDA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0008033 - tRNA processing [Evidence IEA]; GO:0031119 - tRNA pseudouridine synthesis [Evidence IDA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3 product : pseudouridine synthase 1 isoform 3 protein_id : NP_001020733.1

name	Ulk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254402 CCDS:CCDS19532.1 GeneID:22241 MGI:1270126
definition	GO_component : GO:0030659 - cytoplasmic vesicle membrane [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007265 - Ras protein signal transduction [Evidence IDA] codon_start : 1 product : Unc-51 like kinase 1 protein_id : NP_033495.2

name	Hscb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956362 GeneID:100900 MGI:2141135
definition	GO_component : GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0051087 - chaperone binding [Evidence IEA]; GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : J-type co-chaperone HSC20 protein_id : NP_705799.1

name	Chek2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7710088 CCDS:CCDS19533.1 GeneID:50883 MGI:1355321
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : protein kinase Chk2; Cds1 homolog; Rad53 homolog product : CHK2 checkpoint homolog protein_id : NP_057890.1

name	Ttc28 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149254131 GeneID:209683 MGI:2140873
definition	codon_start : 1 exception : unclassified translation discrepancy note : overriding stop codons product : similar to OTTHUMP00000028696 protein_id : XP_001481358.1 transl_except : (pos:111706166..111706168,aa:OTHER) transl_except : (pos:111706175..111706177,aa:OTHER) transl_except : (pos:111706232..111706234,aa:OTHER) transl_except : (pos:111707515..111707517,aa:OTHER) transl_except : (pos:111709188..111709190,aa:OTHER) transl_except : (pos:111710905..111710907,aa:OTHER) transl_except : (pos:111711823..111711825,aa:OTHER) transl_except : (pos:111711901..111711903,aa:OTHER) transl_except : (pos:111712969..111712971,aa:OTHER) transl_except : (pos:111712978..111712980,aa:OTHER) transl_except : (pos:111713014..111713016,aa:OTHER) transl_except : (pos:111713023..111713025,aa:OTHER) transl_except : (pos:111714019..111714021,aa:OTHER) transl_except : (pos:111714265..111714267,aa:OTHER) transl_except : (pos:111714268..111714270,aa:OTHER) transl_except : (pos:111714493..111714495,aa:OTHER) transl_except : (pos:111714598..111714600,aa:OTHER) transl_except : (pos:111714775..111714777,aa:OTHER) transl_except : (pos:111715003..111715005,aa:OTHER) transl_except : (pos:111715171..111715173,aa:OTHER) transl_except : (pos:111715183..111715185,aa:OTHER) transl_except : (pos:111715393..111715395,aa:OTHER)

name	Pitpnb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790159 GeneID:56305 MGI:1927542
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0008289 - lipid binding [Evidence IEA]; GO:0005543 - phospholipid binding [Evidence ISS] GO_process : GO:0001701 - embryonic development (sensu Mammalia) [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : phosphatidylinositol transfer protein beta isoform; Pitp beta; phosphotidylinositol transfer protein, beta product : phosphatidylinositol transfer protein, beta protein_id : NP_062614.1

name	Mn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486985 GeneID:433938 MGI:1261813
definition	GO_process : GO:0001957 - intramembranous ossification [Evidence IMP] codon_start : 1 product : meningioma 1 protein_id : NP_001074704.1

name	LOC667243 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667243
definition	number : 1 pseudo : _no_value

clone name	MSMg01-291P11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-354G11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-391L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439A03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-391H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-071H14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-074H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-206O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047G05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-388E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122N12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146B09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046F14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187P11
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-299H11.T7 (MSMg01no299_h11.b1)	MSMg01-299H11.TJ (MSMg01no299_h11.g1)
ACC	AG426232	AG426233
length	732	787
length of high quality (start - end)	557 (45 - 601)	34 (189 - 222)
definition	CHROMAT_FILE: MSMg01no299_h11.b1 PHD_FILE: MSMg01no299_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:24 2005	CHROMAT_FILE: MSMg01no299_h11.g1 PHD_FILE: MSMg01no299_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:24 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA ATTCCATCAATTAATACATTTTGTTATTCAATCCCTAAGAGTATTTTAAA GGTACTTGACACCAAACCTGAAAACCTCCAGTCACAAAGAGCCCACAATA GAAGAGAACAGACTTCTCCAGGTTGTCCTATAACAAGCTCTCTCTCTCTT TCTCTCTCTCTCTCTCTCTCACACACACACACACACACACATTCTATCTC TCTCACACACACACACACTCTCACAACTCTCACATATACACTCTCTCATA TACTTACACACTCACACACACACACTCTCTCACACATACACACACACACT CTCACAACATTCTTATATACACACACTCTCATACACTCTCATACACACAC TCTCATACACACACTCTCACATACACACACTCTCACTTTCACACAGGCAC TCACACTCTTTCATACACACACTCACTCTCACATACACTCTCACACACAG TCACACACAAAGCAGAGAAACTCTGAAAGCTGAAGCTATAGGACTTGCCT AGCATGAACTATTTTCAACCCCCAATGCTATAAACACCAAAAATAACCAG AAACTAAACTACTAATCTATCCTTGAGGTACAAAGACTAGCTTTAGTACT TTAAAATTCTCTTGTTGGAAATAGAATGAAAAATGAAAACCGACCAAATA TCCATTCTTTAGGAATAAAACATGCCCTATAT	AATGCTGTGGGAGGCCTGGGGGAGGCCTGATACAAAAACTGTNGGNGANN NAGAGAAGTTTCCACAAAACGCGGCGGNNCAAGGGCCCNAAGNAACANAG GGCGAGGNNGGGGCGNCAGCCCCCCAAAAGAGCCAGGGAAGAACCGAAGN ACCAGGCCCCCGGGGCCCGGGGCGCGGGGAACCCCCGAGAAACCCAAAAA GACCAGCNGAGGGAAAGCAAGGGGAAAGAAAAACAGCGCGNAAAAAAAGC CTTTTTACGAAGAACGACAGGAGGGAGCGAGACACACGAGCANCGAGAGG AGGCAGGAACAGCAGGATTTCCTCTTTTCAAGCCCAGGGGAGAAAGAGAG AAGGGATTTTTGAGTGAGTTCCGANACCAAANCCCCGGTTTTTTTTTTTT GATTAGGGGGGAGGGGGNNCCCCAAAAATNTTATTCCAAAAATGCTTCCT CGCTTCCCGGCGCCCCCTCCCTTCCCTCTCCAGTCTTTGATCATCTGTGG CGCATGCCCTTGGACTCCCTGGCTGGAGTCGTAGCCGCCCTCGCCCTTTT GAGAGGGACATGTGCGTAGTGGGAGGCCCGGTAGGGGAGCCTTTCTGCTA AGTTGCGCATGCCGAGACGACGCGCGAGATGCGCCCGGCCCCGGCGTCCC AGGACGGGGCACCAGAGGCCGGCAGTGGGGGCGCCCGGCTTTTTTTTTTT TTTTTCCGGTAACGACACGTATGTTGTGGTGGCGTGCCGTAGCCGACGTG GACCGGTCCGGGTTGCGCGGCCGAGGCGCGCTGATTT
quality values	Open. Hide. 10 10 10 10 10 18 23 30 34 28 22 22 22 19 15 23 17 14 9 9 9 19 19 39 25 28 28 28 22 24 37 28 28 28 28 37 39 57 57 40 37 36 33 28 24 35 30 39 29 36 36 31 33 33 30 28 28 22 20 10 8 8 8 8 19 19 33 33 33 33 39 47 39 43 48 48 36 36 33 30 30 42 44 57 48 48 46 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 44 44 37 39 48 43 48 47 47 47 47 47 47 44 44 39 42 42 44 43 57 44 44 39 43 43 37 37 37 44 42 47 41 47 47 57 59 59 46 43 43 43 50 43 43 43 57 59 57 57 68 68 68 59 57 57 52 52 50 50 37 37 41 50 50 50 52 57 57 57 59 59 59 59 59 52 52 52 59 59 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 59 57 57 48 48 57 57 57 68 57 57 57 57 57 57 57 57 59 59 57 57 57 54 54 54 59 59 68 68 68 68 68 68 68 68 68 57 57 54 54 54 57 59 59 57 57 57 57 57 57 57 57 57 57 53 50 47 47 50 47 47 41 48 42 41 34 29 21 18 12 11 11 11 11 12 23 31 59 47 47 47 48 48 48 50 57 57 57 57 48 48 48 48 48 48 48 48 48 48 53 50 50 50 41 34 34 16 13 9 9 8 8 8 8 8 8 9 12 18 18 34 34 40 48 48 48 59 59 48 48 48 43 43 39 39 43 40 40 43 43 43 39 47 47 48 42 42 42 48 48 50 54 57 57 57 57 48 39 39 39 37 32 32 28 28 22 23 23 28 28 42 43 48 57 57 57 38 38 22 23 23 28 32 36 37 44 57 57 44 42 32 32 17 11 8 8 8 8 10 15 32 30 30 35 41 41 42 57 57 57 47 41 41 57 57 47 47 57 57 57 57 57 57 48 48 57 59 44 48 35 35 35 44 36 43 43 46 48 57 48 48 48 48 41 41 41 41 42 42 31 31 22 24 24 33 30 33 30 32 32 40 40 35 35 35 37 39 39 43 43 32 32 20 18 18 30 30 22 25 25 30 29 29 37 43 43 59 59 47 46 46 43 43 43 43 43 28 28 14 18 12 25 25 37 43 37 32 32 19 19 19 32 32 27 27 11 11 11 23 27 37 37 30 32 32 35 35 37 39 33 32 28 25 25 21 23 19 22 22 22 37 37 39 39 37 23 23 11 11 11 21 21 25 10 10 9 12 18 11 12 15 30 30 37 30 24 17 24 24 33 33 32 32 25 28 21 22 20 24 24 21 22 21 21 19 21 13 11 11 13 13 22 24 28 27 14 10 10 19 19 28 24 39 32 32 28 31 31 30 30 28 21 21 13 13 15 15 21 19 24 19 26 21 28 23 28 28 32 32 32 30 28 31 28 28 21 10 10 10 9 9 12 25 22 12 10 8 8 11 13 14 18 14 12 15 15 23 27 21 24 16 15 9 9 9 15 15 10 10 9 9 8 10 12 12 14 22 18 18 18 18 17	Open. Hide. 6 6 6 8 8 8 8 8 9 14 16 17 16 16 29 22 15 19 9 7 7 6 6 8 8 14 10 8 3 3 3 6 6 6 6 6 6 6 6 6 6 3 0 3 3 0 3 3 0 0 0 3 12 10 15 9 9 9 9 15 10 9 8 8 8 8 8 10 11 10 11 11 8 8 10 10 3 0 0 3 10 10 10 13 8 10 16 3 0 3 29 3 0 3 21 21 3 0 3 9 9 17 9 9 9 9 3 0 0 3 7 7 7 8 3 0 3 10 10 11 8 8 9 9 11 11 15 12 14 18 30 18 23 12 7 7 6 6 8 7 7 9 19 20 9 9 9 23 3 0 3 25 23 9 9 9 25 23 11 6 6 6 6 6 6 6 10 8 13 9 10 10 10 9 9 10 10 10 11 12 12 25 30 21 21 11 11 11 23 23 34 30 23 14 14 23 23 37 41 47 41 37 22 17 9 9 3 0 3 23 27 47 41 40 39 39 28 24 14 14 11 11 12 12 16 10 8 8 8 11 12 25 17 13 8 8 8 8 9 3 0 3 16 15 23 15 11 8 8 8 8 8 8 8 13 11 9 12 12 28 30 43 28 15 10 10 10 13 12 16 24 9 9 9 9 9 23 18 18 11 9 9 9 9 6 8 6 6 8 9 9 3 0 3 10 13 16 23 32 34 40 43 37 36 29 29 29 16 15 21 13 10 10 13 10 14 12 12 12 8 7 7 7 8 8 17 17 9 9 12 12 15 23 12 14 11 21 12 14 12 12 11 8 8 7 7 8 8 10 12 15 15 11 11 10 13 10 11 12 14 3 3 3 3 3 3 3 9 9 7 7 7 7 3 0 3 6 6 6 6 3 0 3 7 9 13 11 11 10 21 22 27 17 16 19 14 13 11 15 16 15 9 9 10 10 10 15 12 12 12 13 8 7 9 7 7 3 0 0 3 11 17 19 19 19 16 13 9 3 0 3 7 8 8 7 7 7 8 11 10 10 9 7 7 6 6 6 6 6 6 6 6 6 6 8 8 9 9 6 6 6 6 8 8 8 9 9 10 8 8 8 9 9 9 9 12 16 9 8 9 10 10 6 7 6 6 8 8 8 10 8 10 9 15 10 9 12 10 10 8 8 8 8 7 9 9 11 11 11 8 8 9 12 13 8 9 8 8 8 8 8 8 8 8 8 10 10 8 8 9 9 9 9 9 9 9 10 9 9 9 9 9 9 9 12 12 15 19 23 24 26 19 16 11 10 10 10 10 19 21 15 10 8 12 12 10 10 8 8 8 8 8 8 15 14 13 13 15 10 10 10 9 9 9 21 14 8 8 10 10 10 13 16 21 10 10 7 6 8 8 9 9 10 10 8 8 8 10 10 8 8 8 9 7 8 10 8 8 8 8 6 6 8 8 8 6 8 8 8 6 7 8 8 8 8 6 6 8 8 10 12 15 12 16 12 10 9 8 10 8 8 8 8 8 8 8 9 10 9 10 10 10 13 10 11 11 11 11 11 10 11 8 8 8 8 8 8 8 8 9 9 9 9 9 10 12 9 11 8 8 8 10 9 16 14 11 18 19 18 12 12 9 9 10 10 8 8 10 10 10 9 8 10 8 8 8 8 8 8 8 8 8 9 10 10 10 8 8 6 6 6 6 8 6 8 7 6 8 8 6 6 6 6 8 8 6 6 9 10 13 13 9 11 10 10 10 10 13 8 8 8 8 8 8 10 7 7 10 11 11 14 14 12 11 9 8 10 10 8 8 8 6 6 6 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no299_h11.b1 MSMg01no299_h11.b1 CHROMAT_FILE:
MSMg01no299_h11.b1 PHD_FILE: MSMg01no299_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:24 2005
         (557 letters)



>mm_chr5_111293892_111294849
          Length = 958

 Score =  522 bits (270), Expect = e-152
 Identities = 328/358 (91%), Gaps = 21/358 (5%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatcaattaat---acattttgttattcaatccctaagagtattttaaaggta 60
           |||||||||||||  |||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggaattccatcaa--aattacacattttgttattcaatccctaagagtattttaaaggta 287

                                                                       
Query: 61  cttgacaccaaacctgaaaacctccagtcacaaagagcccacaatagaagagaacagact 120
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 286 cttgacaccaaacctgaaaacctccagtcacaaagagcccaccatggaagagaacagact 227

                                                                       
Query: 121 tctccaggttgtcctataacaagctctctctctctttctctctctctctctctctcacac 180
           |||||||||||||||||||||||||||||||||||            ||||| | |||||
Sbjct: 226 tctccaggttgtcctataacaagctctctctctct------------ctctcacacacac 179

                                                                       
Query: 181 acacacacacacacacattctatctctctcacacacacacacactctcacaactctcaca 240
           ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 178 acacacacacacacacattctctctctctctcacacacacacactctcacaactctcaca 119

                                                                       
Query: 241 tatacactctctcatatact--tacacactcacacacacacactctctcacacatacaca 298
           |||||||||||  |||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tatacactctc--atatactcttacacactcacacacacacactctctcacacatacaca 61

                                                                     
Query: 299 cacacactctcacaacattcttatatacacacactctcatacactctcatacacacac 356
           ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||
Sbjct: 60  cacacactctcacaacactcacatatacacacactctcatacactctcatacacacac 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space:   518556
Effective search space used:   518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information