BAC Information

Click to search

BAC

Clone NameMSMg01-299O18
Chromosome5 (Build37)
Map Location 81,556,730 - 81,557,071
singlet/doubletsinglet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299O18.T7 (MSMg01no299_o18.b1)MSMg01-299O18.TJ (MSMg01no299_o18.g1)
ACCAG426559AG426560
length760760
length of high quality
(start - end)
525 (51 - 575)344 (80 - 423)
definitionCHROMAT_FILE: MSMg01no299_o18.b1 PHD_FILE: MSMg01no299_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:58 2005CHROMAT_FILE: MSMg01no299_o18.g1 PHD_FILE: MSMg01no299_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCC
GCGGAATTCCTGATCTTTTCAGAACTTTTATCATGAATGGGTGTTGGATC
TTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAA
ACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATT
GCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTT
TGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTG
GATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAG
TTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAAC
TGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGT
CTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATAACTGCTTCTATT
TCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAA
CTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTT
CCAGTTTTTGTGAGTATAGCCTTTTGTACAAGGATCCGATGGCGTTTTGG
ATATCTTCACGAACGCTCGTTATGTCCTCCCCTTCTCTCTCGAATTTTTT
AAATTTGCAG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGAAATTCTTGTCAAAACGG
CTGACTTGGTTTTTGTTCCCCACCAGGACAGTCAATGGGGGCAAACACCA
AAGAAAGATAACTGCTAGCCCTTTTGTGGGAAATAGGAAATGTTGACACC
AGTGAGGATGGCTGTAAGTGTATTTACAATATTGACACGAGATTGGCAGC
TGCTCACATTCTGCCTGAAAGGTTTACTACTGGCAGGGACTCCCAGCAGC
TGCTTGCTGGGAACGTGAGAAAACATTTGGACAGTTAGGGTAGCCTGATT
TCCCCCCTGAAAATCTGTTTTTTTAAACTTCCTGGCAGTTAATAAGATTA
TGTGAAAAAAAAAAAAGATCTTCCACTGTGTTCACATCTCTTCATAAAAC
TTATATTGCCAATATAGATAATATTTTCAAAATCTATGATTTACAGAAAT
TTGATTGCTGAATAATGTTTCTTTATTAGATTGTACAAATGGGGACTGGA
TTACAAGGTAATATTAGTATTTTTAATGAAAGTTCTCTTCACAGAGTAAC
TTTCCTTTTAAAGAAATGACAAATTCCTGGGCTGGGGTACATTTTTAACA
GAAAACTGAGATGAGAACAGAGACCATGATCCCACACTTTGTGATAAATT
TGAAGTCCTCCTTAAGAAATCAATCTTACTATGTTGGGGTTTTTGAGAGC
TCCTTTGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_o18.g1 MSMg01no299_o18.g1 CHROMAT_FILE:
MSMg01no299_o18.g1 PHD_FILE: MSMg01no299_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:59 2005
         (344 letters)



>mm_chr5_81556530_81557272
          Length = 743

 Score =  625 bits (323), Expect = 0.0
 Identities = 338/347 (97%), Gaps = 9/347 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaaattcttgtcaaaacggctgacttggtttttgttccccaccaggacagtcaatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aggaaattcttgtcaaaacggctgacttggtttttgttccccaccaggacagtcaatggg 483

                                                                       
Query: 61  ggcaaacaccaaagaaagataactgctagcccttttgtgggaaataggaaatgttgacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggcaaacaccaaagaaagataactgctagcccttttgtgggaaataggaaatgttgacac 423

                                                                       
Query: 121 cagtgaggatggctgtaagtgtatttacaatattgacacgagattggcagctgctcacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cagtgaggatggctgtaagtgtatttacaatattgacacgagattggcagctgctcacat 363

                                                                       
Query: 181 tctgcctgaaaggtttactactggcagggactcccagcagctgcttgctgggaacgtgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tctgcctgaaaggtttactactggcagggactcccagcagctgcttgctgggaacgtgag 303

                                                                       
Query: 241 aaaacatttggacagttagggtagcctgatttcccccctgaaaatctgttttttt----a 296
           ||||||||||||||||||||||||||||||||||||||||||||||||    |||    |
Sbjct: 302 aaaacatttggacagttagggtagcctgatttcccccctgaaaatctg----tttggcaa 247

                                                          
Query: 297 aacttcctggcagttaataagattatgtgaaaaaaaaaaaagatctt 343
           ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 246 aacttcctggcagttaataagattatgtg-aaaaaaaaaaagatctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 743
Length adjustment: 9
Effective length of query: 335
Effective length of database: 734
Effective search space:   245890
Effective search space used:   245890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)