Query= MSMg01no299_p04.b1 MSMg01no299_p04.b1 CHROMAT_FILE:
MSMg01no299_p04.b1 PHD_FILE: MSMg01no299_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:00 2005
(664 letters)
>mm_chr5_49433997_49435060
Length = 1064
Score = 1253 bits (648), Expect = 0.0
Identities = 657/660 (99%)
Strand = Plus / Plus
Query: 5 gaattcatttttgttgctggaaatcaaatcctggtcctctatatgagcaacaaatattct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttttgttgctggaaatcaaatcctggtcctctatatgagcaacaaatattct 264
Query: 65 aaactactgagccatctttcctatcctcttcattccttactttcaagattaaaatgaata 124
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaactactgagccatctttcttatcctcttcattccttactttcaagattaaaatgaata 324
Query: 125 tatcatatgcccaatagaactactaaatagacttttgaaaatatagcataaaagcattca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatcatatgcccaatagaactactaaatagacttttgaaaatatagcataaaagcattca 384
Query: 185 gaaatttacctaatattgaatttgataaattttagctggcttactactaagaatgttgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaatttacctaatattgaatttgataaattttagctggcttactactaagaatgttgaa 444
Query: 245 aagttaatatctctcttcagatctccaggacttagtacagtgccaggcatagacaagaca 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 aagttaatatctctcttcagatctccaggacttagtacagtgccaggcatagacgagaca 504
Query: 305 catcatgaggaactgtgttaccatttgcaccttgaaagtgaaaattggctttgtctctca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catcatgaggaactgtgttaccatttgcaccttgaaagtgaaaattggctttgtctctca 564
Query: 365 atcttttcttttggtgaacttgagaaagcaaaacaaattttctgaaagtgccatgttctt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcttttcttttggtgaacttgagaaagcaaaacaaattttctgaaagtgccatgttctt 624
Query: 425 cctcccacagatcttcccactccactcccacatatctcgtgctaacaagttatttattgt 484
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 cctcccacagatcttcccactccactcccacatacctcgtgctaacaagttatttattgt 684
Query: 485 ttcatggtctgaacatataaagtgtttggcccctggaatgctcagtcaatacttgatgga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcatggtctgaacatataaagtgtttggcccctggaatgctcagtcaatacttgatgga 744
Query: 545 ttgaattttctttttcttgctgccttctattatgtcaaagtaaagtggagagtaagaggc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgaattttctttttcttgctgccttctattatgtcaaagtaaagtggagagtaagaggc 804
Query: 605 cattttgctgagccttattctcttcattgtatcttagtcttcctctttattttctttctg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cattttgctgagccttattctcttcattgtatcttagtcttcctctttattttctttctg 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_p04.g1 MSMg01no299_p04.g1 CHROMAT_FILE:
MSMg01no299_p04.g1 PHD_FILE: MSMg01no299_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:01 2005
(584 letters)
>mm_chr5_49527934_49528916
Length = 983
Score = 1036 bits (536), Expect = 0.0
Identities = 572/584 (97%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 1 cacaggcacacaacataaactggaaggaacagcatcacatttgatcttgccaacttcacc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 783 cacaggcacacaacataaactggtaggaacagcatcacatttgatcttgccaacttcacc 724
Query: 61 ctttcaaagattccattctgtgcctcccaagaggcttagtgacttccttctttctctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ctttcaaagattccattctgtgcctcccaagaggcttagtgacttccttctttctctttt 664
Query: 121 ccaggcagcagagtaaagtgtgtatgaaggaacttataaaattccctttggcatttctgt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 663 ccaggcagcagagtaaagtgtgtatgaaagaacttataaaattccctttggcatttctgt 604
Query: 181 tgtcctttgattcctccttgatgttactttggggaaaaaatgtattttacctgtaggctt 240
|||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 603 tgtcctttgattcctccttgatgttactttggggaaaaaa-gaattatacctgtaggctt 545
Query: 241 ttattccttgtccctctttctctcttcctttctgattctctcacagctttgagatgccca 300
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 544 ttattccttgtccctctttctctcttcgtttctgattctctcacagctttgagatgccta 485
Query: 301 ggctgcctatgaatagtgcaaaactgtaagataaatgactaaaaaaaggtcaacctgcca 360
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 484 ggctgcctatgaatagtgcaatactgtaagataaatgactaacaaaaggtcaacctgcca 425
Query: 361 agacaaaatagaaaaagcaaatatttttttaaaatgtcatattctgtgacaagtatggat 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 424 agacaaaatagaaaaagcaaatatttttttaaaaagtcatattctgtgacaagtatggat 365
Query: 421 aacaattgacttccataacatccctccagaacttttctttaaaagtaagggtattcttaa 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 364 aacaattgacttccataacatccctccagaatttttctttaaaagtaagggtattcttaa 305
Query: 481 tactggagatttgtttaaagacataattatgtttgatgatgatgtgggtaaaacaccaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tactggagatttgtttaaagacataattatgtttgatgatgatgtgggtaaaacaccaca 245
Query: 541 tagctggggatttatagtgcttttgaatgaaaggagggaaaagc 584
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 244 tagctggggatttattgtgcttttgaatgaaaggagggaaaagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
