CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCAGTTTTATCTTTCCATGGATAGAAGCTGGCATCCCAAAGATATT
CTTTCCTGTGTTTTATGATGAAACATTCACATTAAAAAGCAATAATCAGA
CTATCCAAATGTATATCTTGTATAGATGGCACAGTTGACATTTTGCTTGT
ATAAATGTACATGTTGTAGTGTTCTGTCACTAGTTAGTTAATGCCATCTT
CTGTATAAATGTTCACTTTTTTGTTGTTGTTTTGATTTGTTTGTTTGTTT
GTTTGTTTGTTTGTTTTGAGACAGAGTTTCTCTGTATAGCCCTGGCTGGA
ACTCACTTTGTAGACCAGGCTAGCCTCGAACTCAGAAATCTGCCTGTCTC
TGCCTCCCAAGTGCTGGATTAAAGGTGTGCGCCACCACCTCCCAGCAAAT
GTTCACTTTTAAATGAAATTTCAGTGTAGGGCATGCATCACTTTATGCTT
TTTTATTTTTTAGAGATTTGTTTACTTTTTATTTATATAAGTACACTGCA
GCTGTCTTCAGACACACTAGAAGTGTGCATTGGATCCCATTACAGATGGT
TGCTGGGAATTGACCTCAGGGCCTCTGGAAGAGCAGTCAGTGCTCTTAAA
CTGCTGAGCTTTCTCTCCAGCCCTTTATTTGTGCTTTTAAGGACCCACAA
CATGTTATGCTGCCAGGAAGCAGAAAAACTCCTGGGCCAAACAAATCTCC
TGATTAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAAAGGCTGAGAA
ACACTTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCA
AAACAACCCTGAGATTCCATCTCACACCAGTCAGAATAGCTAAGATCAAA
AAATTCGGGTGACAGCAGATGCTGGTGAGAATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTTGGATTGCAAGCTTATACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTGCCGGAGGATCCTGC
AATACCTCTCCTGGGCATATATCCAGATGCCCCAACCGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATTCCAAAAATGTGGTA
CATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGATA
TTAGCCCAGAAACTTCGTATAGCGAGATATAAGGTACAATATGCAAAACA
TATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGACACTGTATTCCTTC
TTAGAAATN

Query= MSMg01no301_o20.b1 MSMg01no301_o20.b1 CHROMAT_FILE:
MSMg01no301_o20.b1 PHD_FILE: MSMg01no301_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:26 2005
         (564 letters)



>mm_chr5_9028480_9029443
          Length = 964

 Score =  998 bits (516), Expect = 0.0
 Identities = 556/582 (95%), Gaps = 22/582 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccagttttatctttccatggatagaagctggcatcccaaagatattctttcct 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccagttttatcttttcatggatagaagctggcatcccaaagatattctttcct 264

                                                                       
Query: 65  gtgttttatgatgaaacattcacattaaaaagcaataatcagactatccaaatgtatatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgttttatgatgaaacattcacattaaaaagcaataatcagactatccaaatgtatatc 324

                                                                       
Query: 125 ttgtatagatggcacagttgacattttgcttgtataaatgtacatgttgtagtgttctgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtatagatggcacagttgacattttgcttgtataaatgtacatgttgtagtgttctgt 384

                                                                       
Query: 185 cactagttagttaatgccatcttctgtataaatgttcacttttttgttgttgttttga-- 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  
Sbjct: 385 cactagttagttaatgccatcttctgtataaatgttcacttttttgttgttgtttttatt 444

                                                                       
Query: 243 ----------tttgtttg-tttgtttgtttgtttgtttg---------ttttgagacaga 282
                     |||||||| ||||||||||||||||||||         ||||||||||| 
Sbjct: 445 tgtttttttgtttgtttgttttgtttgtttgtttgtttgtttttttgtttttgagacagg 504

                                                                       
Query: 283 gtttctctgtatagccctggctggaactcactttgtagaccaggctagcctcgaactcag 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtttctctgtatagccctggctggaactcactttgtagaccaggctagcctcgaactcag 564

                                                                       
Query: 343 aaatctgcctgtctctgcctcccaagtgctggattaaaggtgtgcgccaccacctcccag 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatctgcctgtctctgcctcccaagtgctggattaaaggtgtgcgccaccacctcccag 624

                                                                       
Query: 403 caaatgttcacttttaaatgaaatttcagtgtagggcatgcatcactttatgctttttta 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaatgttcacttttaaatgaaatttcagtgtagggcatgcatcactttatgctttttta 684

                                                                       
Query: 463 ttttttagagatttgtttactttttatttatataagtacactgcagctgtcttcagacac 522
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttttagagatttatttactttttatttatataagtacactgcagctgtcttcagacac 744

                                                     
Query: 523 actagaagtgtgcattggatcccattacagatggttgctggg 564
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actagaagtgtgcattggatcccattacagatggttgctggg 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)