BAC Information

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BAC

Clone NameMSMg01-302C10
Chromosome5 (Build37)
Map Location 102,195,230 - 102,195,517
singlet/doubletsinglet
Overlap geneCds1
Upstream geneHel308, Mrps18c, Ccdc98, A230097K15Rik, LOC100041888, LOC100040902, Cycs-ps2, LOC100040920, Nkx6-1
Downstream geneWdfy3, EG666515, EG666527, LOC625780, Arhgap24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302C10.T7 (MSMg01no302_c10.b1)MSMg01-302C10.TJ (MSMg01no302_c10.g1)
ACCAG428134AG428135
length735748
length of high quality
(start - end)
235 (127 - 361)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no302_c10.b1 PHD_FILE: MSMg01no302_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:43 2005CHROMAT_FILE: MSMg01no302_c10.g1 PHD_FILE: MSMg01no302_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACATGGCTGGCTGCCTTTCTGTCCCACAGCTCTTAGGTCTCAT
CCCTCTGCCCTCAAGTCATGGTGACCCTCCCTCTGCTTCCCTCCCAGTTC
CTAGCCCACTCAACTATAAAGGTTCCGCCTCTCTCTTTCCACCCAGCCAT
TGGCCATTGGCTCTTTATCGGTCAATCAAAAACCAACTGGGGACAAGAAC
CTTCAGCATTTTACAAGCAAATGTGGGAATTCCCATGCAACTTGGGAATC
CATTAAATCAGGATCACAACAGTTCTGTAATGGTAGTCATTCCGGTAATG
GAAATGTCATAGTCTGTTTATGACACACCCCGGCTTATACCTTCCAGGCG
AAACCTGTAATGCTGTTACTGTCTTAAAACATAATATTGCTTTGTATAGG
ATATTGTCTTTTAGATTTATTTTATAAAGTTATATTGTATACTCTTTATA
AATTATTTCTAAAATACTTCTTCATAGCTGTGGCTCATAGGTGTGACACA
ACAAGACTCTAAACCTTGCACCTAGGAGGCCGAGACAGACAGATCTCTGA
GTTTGAGGGCAGCTTGGTCGACACAGACAGTAATGACATGGTGACTGTAT
CAGAATACTCACTGTATGTTAAAACGATAGAAAGTGGTCTGTGGATGCTA
CAGTGCAATGGTTAACTTTGTAATATAAAAAGTAA
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTTCGCTTGAGAGACTCAAAACTTTT
GAATCATTCTTGGATTTCTGTTTTGTGGAATGTAGTGTGGTGGTATCTGT
CATCCCAGCACTTGGGGGTAGGTGTGGAGGCAAGGACTGCCAAGATCATT
CTCAGCTTTGTAGTCAGCTCAAGGTTGGCCCGGGGCTCAAACAGACACAA
AAGACAGACAACCCAAATGGACTTGCGTTGCCCAAGGTCAAGTTCTCTGC
CTTTTGGTAGTGGAACTAACTTCTCTGTTTTCTGTCTTTTGCCTTTTGCT
GTTCTGATTTTCTTTGGTTTCCGNNGACGANCCCAAGTTCCTCCCAAAAC
TTACACAGATGAACTTGCCACAGCTTAGAAAAAAAATCTGTGCTGCCGCA
GCAATATGGTTATCAATAAATACGTGATTTTAGAACCACAGCTTCTTCCC
TGTTCCTGATGGATAGTGAGTTAAGATGAGAGTCTGGGAAACATTTGTGC
TGCCGAGGATTGACTCAGAATATACCCACTTTCCTGCTGCGGAAGGTTGA
AAAAACGGAAAGTCTTGGGCTTGAAAGTATCTTCCTTGAAAAGTGCCTTG
GAAACCATGACCCCTAATATGATTTTTTTTATGTTTGGGATTTTTGTTTT
TATCCCCTGGATATCTTTTTAAAACCATGGAAATTTTCTTCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_c10.g1 MSMg01no302_c10.g1 CHROMAT_FILE:
MSMg01no302_c10.g1 PHD_FILE: MSMg01no302_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:43 2005
         (287 letters)



>mm_chr5_102195033_102195719
          Length = 687

 Score =  542 bits (280), Expect = e-158
 Identities = 285/288 (98%), Gaps = 3/288 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttcgcttgagagactcaaaacttttgaatcattcttggatttctgttttgtggaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ctcttcgcttgagagactcaaaacttttgaatcattcttggatttctgttttgtggaatg 257

                                                                       
Query: 61  tagtgtggtggtatctg---tcatcccagcacttgggggtaggtgtggaggcaaggactg 117
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tagtgtggtggtatctgccgtcatcccagcacttgggggtaggtgtggaggcaaggactg 317

                                                                       
Query: 118 ccaagatcattctcagctttgtagtcagctcaaggttggcccggggctcaaacagacaca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccaagatcattctcagctttgtagtcagctcaaggttggcccggggctcaaacagacaca 377

                                                                       
Query: 178 aaagacagacaacccaaatggacttgcgttgcccaaggtcaagttctctgccttttggta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aaagacagacaacccaaatggacttgcgttgcccaaggtcaagttctctgccttttggta 437

                                                           
Query: 238 gtggaactaacttctctgttttctgtcttttgccttttgctgttctga 285
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gtggaactaacttctctgttttctgtcttttgccttttgctgttctga 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)