NNCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTACTTGCGCAGTAGGTTATCATTAACAGTGCTGAGAA
CAAAGCATAGCATAAGGGCTTGTTTCAGGTGGATTGAGGGGGAAGCATAT
AGGTTTTAATAGCAACATGGCTGGAGGCCATCACTGTGATACTTACAAGA
AAAAAAATCTGTCTGCCTTTATCCTAAGAGCCTCTCTGAGAATAAATTTT
TAAATTAATAAACTAATTCATTTTGTAGAACAACTTCAAAAAAGTATAGT
ATTTATCCAATGGCATGGTTGATTTTATAAAATTATGCAAATCTTCACAG
AAAAAGAGCAAGTAAGTCATTAAGAAAGAAAAGCAATAGCATTTGAAGAG
GAAAGAAGCACCAGAAAACTTAACATTTCAGCCAAAGCTTGTACATAATT
CCTCTGGTGTTTCACAGAGCTGCTGAAGTCATGCTGCCTGTGACAGCCAC
ACCCCTGTTAGAAAGCACTGAGAGACCATTAGAAAATACCATCCTGGCTG
GAGCAGGTAGGGGAGCCATCTTGGGTCCCAGATCCCTCAGAGACTAGTCT
GTGCAGGAGAGAGTGCAGACCATAGAAGTGACACAGATTCTGGGACAGGC
AGAAGAAGCACAGCTTCTGGGACAGACCACATTTGGGGCTCCAAATATCT
GGGTACCTTCACCTCCAGAGAAGG

CTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATG
GCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATTATCAGGGAAAT
TCAAATCAAAAGAGCCCTGAGATTCCATCTCACAATAGTCAGAATGGCTA
AGATCAAGAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTTCTCCATTGCTGGTGGGATTGCAAGATTGTACAACCACTCTG
GAAATCAATCTGGAGGTTCCTCAGAAAATTGGACATAGTACTACAGGAGG
ATTCCACAATACCTCTCCTGGGCATATATGCAGAAGATGTTCTAACTGGT
AAGAAAGACACATGCTCCACTATCTTCATAGCGGCCTTATTTATAATAGC
CAGAAGCTAGAAAGAACCCAGATGCCCCTCAACAGAGGAATGAATACAGA
AAATCTGGTACATTTACACAATGGAGTATTACTAAGTTATTAAAAAAAAT
GAATTTATGAAATTCCTCGGCAAATGGATTGACCTGGAGGTCATCATCCT
GAGTGAGTTAACCCAATCACAAAAGAACTCACATGATATGTACTCACTGA
TAAGATTATAGTAGCCCAGAAACTTAGAATACCAAAGATACAGGATGCAA
AAGACATGACACTCAAGAAGAACAAN

Query= MSMg01no302_f04.b1 MSMg01no302_f04.b1 CHROMAT_FILE:
MSMg01no302_f04.b1 PHD_FILE: MSMg01no302_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:56 2005
         (673 letters)



>mm_chr5_79436055_79437127
          Length = 1073

 Score = 1172 bits (606), Expect = 0.0
 Identities = 654/670 (97%), Gaps = 2/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtacttgcgcagtaggttatcattaacagtgctgagaacaaagcatagcataa 64
           |||||||||||  | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtaccagag-agtaggttatcattaacagtgctgagaacaaagcatagcataa 263

                                                                       
Query: 65  gggcttgtttcaggtggattgagggggaagcatataggttttaatagcaacatggctgga 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggcttgtttcaagtggattgagggggaagcatataggttttaatagcaacatggctgga 323

                                                                       
Query: 125 ggccatcactgtgatacttacaagaaaaaaaa-tctgtctgcctttatcctaagagcctc 183
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 324 ggccatcactgtgatacttataagaaaaaaaaatctgtctgcctttatcctaagagcctc 383

                                                                       
Query: 184 tctgagaataaatttttaaattaataaactaattcattttgtagaacaacttcaaaaaag 243
           ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 384 tctgagaataaatgtttaaattaataaactaattcatttggtggaacaacttcaaaaaag 443

                                                                       
Query: 244 tatagtatttatccaatggcatggttgattttataaaattatgcaaatcttcacagaaaa 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 tatagtatttatccaatggcatggttgattttataaaattatgcaaatctacacagaaaa 503

                                                                       
Query: 304 agagcaagtaagtcattaagaaagaaaagcaatagcatttgaagaggaaagaagcaccag 363
           | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 acagcaagtaagtcattaagaaagaaaagcaagagcatttgaagaggaaagaagcaccag 563

                                                                       
Query: 364 aaaacttaacatttcagccaaagcttgtacataattcctctggtgtttcacagagctgct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaacttaacatttcagccaaagcttgtacataattcctctggtgtttcacagagctgct 623

                                                                       
Query: 424 gaagtcatgctgcctgtgacagccacacccctgttagaaagcactgagagaccattagaa 483
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaagtcatcctgcctgtgacagccacacccctgttagaaagcactgagagaccattagaa 683

                                                                       
Query: 484 aataccatcctggctggagcaggtaggggagccatcttgggtcccagatccctcagagac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aataccatcctggctggagcaggtaggggagccatcttgggtcccagatccctcagagac 743

                                                                       
Query: 544 tagtctgtgcaggagagagtgcagaccatagaagtgacacagattctgggacaggcagaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tagtctgtgcaggagagagtgcagaccatagaagtgacacagattctgggacaggcagaa 803

                                                                       
Query: 604 gaagcacagcttctgggacagaccacatttggggctccaaatatctgggtaccttcacct 663
           |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 804 gaagcacagcttctgggacagaccacattttgggctccagatatctgggtaccttcacct 863

                     
Query: 664 ccagagaagg 673
           ||||||||||
Sbjct: 864 ccagagaagg 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)