BAC Information

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BAC

Clone NameMSMg01-302M05
Chromosome5 (Build37)
Map Location 131,285,836 - 131,286,147
singlet/doubletsinglet
Overlap geneCaln1
Upstream genePsph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302M05.T7 (MSMg01no302_m05.b1)MSMg01-302M05.TJ (MSMg01no302_m05.g1)
ACCAG428564AG428565
length776769
length of high quality
(start - end)
317 (40 - 356)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no302_m05.b1 PHD_FILE: MSMg01no302_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:28 2005CHROMAT_FILE: MSMg01no302_m05.g1 PHD_FILE: MSMg01no302_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTTCATGGTGCCATTTAATTCACCTTGAGGGAGTTGAGGAAAGGGGTCAA
ATAAGTTCTATTATAGAATAATATTCTATATTCCTGTTCTTCCCTGTGCC
TAGTTAAAAGGGTGTCATTCTAATGTTCTACAGTAATGTCCTTCTATTAG
AACACTTCCTCCAGGAAGGGGGTGCTCATGGGACTCAGGACGAAAGCAAA
CTTCCCATACTTAGGGAAGCTGGAACTCTCCAGATGCTGGAGTTCACTAG
GTGCTAGGACGCAGCTCCCTCTAGGTTACAGATGCAGGGAATGATGATGG
GCAAGTTTTCTCNTTATCCCCCCCCCGCCTAGAGGAGACTCTCTGGNCTG
GNCAGCTGCCTACCCCCCCTGAAAAGAAAAACATATGTGTTGTCGCCCAG
GCTGAGATGTTCTTTTGTCAGATAGAGCACCTTTTGAGCCATACTTGTTC
TTGTTAATCCCACTTCACACATATTCCTAACTGACCCCTACGAGTCTCTG
CACACTCATTATTTTCTATCCAGTTAGTCTTTGACGGNTTTCTTTGGAAT
TGTCTACCCCCCCTTTCTATGTATTAAAACAATTTTTTTCCTTTACTTGA
TTACTCCTCCGCATTTTATTACCCTTCTCTCTCTTTACTTAACTCTCTAA
ACAATTCGGCCCTCTCTTTTCTACCCCAGATATTCGCTAACCATACTCCT
AATCCCTACTCTTTAATGTATATTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGAATTACGTCAGATAG
AAATAACCAAGTGCTGTCCCATGAGCCAAGTCCAGCCTGCAGCCATAATT
TGTCTAGCAGATACAAGTTGAGTGTTTAAAACTTGGTGCTATTGGAGCTA
GGGAGAGGGTTCAGAACCTATATAAAACAATCTGGCATGTTACTGCATGA
TTGTAATCCCAGCTAGAGAGGGGGCTTAGGTGGTAAAGAGTTTGCTGCCC
AAGTGGAGTCAGGGAGCTGATCTTGTACCCTCAGAACTCATGCAAGCATC
ATGGTTTTGGATCATTGCCCCACGCCCCACCGACAGGGGGATATGGGGNT
TTGTCAATAGCTACCCCACATAAAAAAAAAAAAAAATGTGGGGGGGGGGG
GTTCCTATTTTCTCCTCATTCTCCGATACCGCATCTAACTTCTTATACTT
ATATATCTTAAACGTCCACCCTTTTCATCATACTCCCCTTATTTTTTTTC
GTTATTTTTCGTATTCGTTTGTCTGCTCTTTTTATACCCCCCCCATTCCT
TTTAACACTTCCTATAATACCCTAAACCCTTACCCTTTTTACCCTATATT
TCCTTCCCTTTAATCTCCCTTTTATTTTACCTCTATATTTTTTTGCCTCT
CATATTTTATTATTCCTCCAATCCCCATTTTCCTCATCTGTCCCTATATT
ATTTACCCCCATTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_m05.b1 MSMg01no302_m05.b1 CHROMAT_FILE:
MSMg01no302_m05.b1 PHD_FILE: MSMg01no302_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:28 2005
         (317 letters)



>mm_chr5_131285633_131286348
          Length = 716

 Score =  543 bits (281), Expect = e-159
 Identities = 305/313 (97%), Gaps = 1/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttcatggtgccatttaattcaccttgagggagttgaggaaaggggtcaaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattcatttcatggtgccatttaattcaccttgagggagttgaggaaaggggtcaaat 456

                                                                       
Query: 64  aagttctattatagaataatattctatattcctgttcttccctgtgcctagttaaaaggg 123
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaattctattatagaataatattctatattcctgttcttccctgtgcctagttaaaaggg 396

                                                                       
Query: 124 tgtcattctaatgttctacagtaatgtccttctattagaacacttcctccaggaaggggg 183
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 395 tgtcattctaatgttctacagtaatctccttctattggaacacttcctccaggaaggggg 336

                                                                       
Query: 184 tgctcatgggactcaggacgaaagcaaacttcccatacttagggaagctggaactctcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 335 tgctcatgggactcaggacgaaagcaaacttcccatacttagggaagctggaactcttca 276

                                                                       
Query: 244 gatgctggagttcactaggtgctaggacgcagctccctctaggttacagatgcagggaat 303
           ||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 275 gatgctggagttcacgaggtgctaggaagcagctccc-caaggttacagatgcagggaat 217

                        
Query: 304 gatgatgggcaag 316
           |||||||||||||
Sbjct: 216 gatgatgggcaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space:   217756
Effective search space used:   217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)