BAC Information

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BAC

Clone NameMSMg01-302N01
Chromosome5 (Build37)
Map Location 26,860,905 - 26,960,986
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038949, EG272714, EG545739, Speer4a, EG664804, LOC619645, LOC100039045, 5031410I06Rik, LOC434689, LOC664837, 4930584F24Rik
Downstream geneDpp6, B930011P16Rik, Speer4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302N01.T7 (MSMg01no302_n01.b1)MSMg01-302N01.TJ (MSMg01no302_n01.g1)
ACCAG428598AG428599
length734733
length of high quality
(start - end)		318 (43 - 360)556 (71 - 626)
definitionCHROMAT_FILE: MSMg01no302_n01.b1 PHD_FILE: MSMg01no302_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:32 2005CHROMAT_FILE: MSMg01no302_n01.g1 PHD_FILE: MSMg01no302_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,960,673 - 26,960,986)(26,860,905 - 26,861,460)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGATAAACATATCTGCTGAAGTATCGCTTCAGGACCACATGTCACGG
AGGCTGCTGAAGAGTTGTCCCCCCACTCCAGCTTCCTCAGCCCTGTGCCT
TGACAATCAAAGGTCAAGGCTGGCTGACACCCAAGGCACTATATTTTTTC
TGAGGAGCATTTAAATCTTTTGTTTTAGAGGTAGATAAAACAATATTGGC
ACATGAAATAGACCACAAGTTAACTAAATAGACTCCACTATTTGTTATGA
AACCTTAATGGAAGATTGCTGCCCCAGAACATTTTCATGCAAACACAGTG
TTTTCGGTCTTNGTCCNCTTGCNNTTCGNTACCCGATGTAAGATGTATTC
TATCTTCCTTTGCTCTGGCAGTAATAAAAATTAAAGAGCCTCTCCATCCT
TCCTAAGCCGATTCCCCAAGCCTGGTCTAAGTATTAAATGATATTAATAT
ATATTAATGTCTGTACAGTAGGTACTCAATATGTATTTAATGTGAGTCAT
GAATAAAAAATATTTAGTTCACTTCAGAAGTATTTTAACTTTAACAGATT
TCCCCAAAGGAAGTTAGAATCTCCTTCTTTACAGTGAAGAAAAGGAGGTT
TCTAAGACTTAGTGTTGTTAGTGGGTGGAAATTTTGAGTCAATTGACATG
TGAGAGCATCTGGATTCATTCCTTAAGTCTTTTA

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACATCTGGTGCAGCCTGAGTTGAGTTATGT
GATCTTGTCATATATGTGAAAATCAGTCTGCTGGAGTTTAAACACTAGAC
GAGATAGACCAAACAGATTGTGCTTTGCCAGCGTGTTTCATTATTTGGCC
ATGAATTTTGTAAAGGACTCATTGCTGTGATCTACTGATATACAATTCTA
TTTAAACCAGGTTAGTAGACTCAGGAAAAACATTAATAAGTTGACTGATA
TGTTCCCTTATACAGTTCAAGGGCATTTGATGATCCCAATTTCTGCAACA
CAGAACAGACTGCTCATCTCTCCCAAGTCCTGTCCTATAAAACTCTGTAG
AGCACACCAGCCTGAGTTTTAACCTTACCTATCCAAGGGATGGCAATTCC
TTACACAAGGGTTTAAAACATCACTCTTTTCTGTTGGTAAGACACAAGGA
ATTGCTATGGTGTTAAAACTTACAACGCTCAACATAAGTAGACAGCACCT
GACATCTACTGAACAGCCTTGATGACTCTGTTGAAGGAGAGGTAGGGAGA
GCACACATTCACTTATAGTCTAAGAGAAACTTTGTATTATTTTGTTAGAT
AAGCCCAGAGCATTTGAGTGAAAAAAACAAAGACTTTGCTCTAACAGTAA
AGACAATTTTACAGGGCAATAAGATAACAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_n01.b1 MSMg01no302_n01.b1 CHROMAT_FILE:
MSMg01no302_n01.b1 PHD_FILE: MSMg01no302_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:32 2005
         (318 letters)



>mm_chr5_26960469_26961186
          Length = 718

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggataaacatatctgctgaagtatcgcttcaggaccacatgtcacggaggctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcaggataaacatatctgctgaagtatcgcttcaggaccacatgtcacggaggctg 459

                                                                       
Query: 65  ctgaagagttgtccccccactccagcttcctcagccctgtgccttgacaatcaaaggtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctgaagagttgtccccccactccagcttcctcagccctgtgccttgacaatcaaaggtca 399

                                                                       
Query: 125 aggctggctgacacccaaggcactatattttttctgaggagcatttaaatcttttgtttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aggctggctgacacccaaggcactatattttttctgaggagcatttaaatcttttgtttt 339

                                                                       
Query: 185 agaggtagataaaacaatattggcacatgaaatagaccacaagttaactaaatagactcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agaggtagataaaacaatattggcacatgaaatagaccacaagttaactaaatagactcc 279

                                                                       
Query: 245 actatttgttatgaaaccttaatggaagattgctgccccagaacattttcatgcaaacac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 actatttgttatgaaaccttaatggaagattgctgccccagaacattttcatgcaaacac 219

                         
Query: 305 agtgttttcggtct 318
           ||||||||||||||
Sbjct: 218 agtgttttcggtct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no302_n01.g1 MSMg01no302_n01.g1 CHROMAT_FILE:
MSMg01no302_n01.g1 PHD_FILE: MSMg01no302_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:32 2005
         (556 letters)



>mm_chr5_26860705_26861660
          Length = 956

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatctggtgcagcctgagttgagttatgtgatcttgtcatatatgtgaaaatcagtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatctggtgcagcctgagttgagttatgtgatcttgtcatatatgtgaaaatcagtctg 260

                                                                       
Query: 61  ctggagtttaaacactagacgagatagaccaaacagattgtgctttgccagcgtgtttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggagtttaaacactagacgagatagaccaaacagattgtgctttgccagcgtgtttca 320

                                                                       
Query: 121 ttatttggccatgaattttgtaaaggactcattgctgtgatctactgatatacaattcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttggccatgaattttgtaaaggactcattgctgtgatctactgatatacaattcta 380

                                                                       
Query: 181 tttaaaccaggttagtagactcaggaaaaacattaataagttgactgatatgttccctta 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tttaaaccaggttagtagactcaggaaaaacattaataagttggctgatatgttccctta 440

                                                                       
Query: 241 tacagttcaagggcatttgatgatcccaatttctgcaacacagaacagactgctcatctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagttcaagggcatttgatgatcccaatttctgcaacacagaacagactgctcatctc 500

                                                                       
Query: 301 tcccaagtcctgtcctataaaactctgtagagcacaccagcctgagttttaaccttacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccaagtcctgtcctataaaactctgtagagcacaccagcctgagttttaaccttacct 560

                                                                       
Query: 361 atccaagggatggcaattccttacacaagggtttaaaacatcactcttttctgttggtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccaagggatggcaattccttacacaagggtttaaaacatcactcttttctgttggtaa 620

                                                                       
Query: 421 gacacaaggaattgctatggtgttaaaacttacaacgctcaacataagtagacagcacct 480
           |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 621 gacacaaggaattgctatggtgttgaaacttacaacgctcaacgtaagtagacagcacct 680

                                                                       
Query: 481 gacatctactgaacagccttgatgactctgttgaaggagaggtagggagagcacacattc 540
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacatctactgaacagccttgacgactctgttgaaggagaggtagggagagcacacattc 740

                           
Query: 541 acttatagtctaagag 556
           ||||||||||||||||
Sbjct: 741 acttatagtctaagag 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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