BAC Information

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BAC

Clone NameMSMg01-303B01
Chromosome5 (Build37)
Map Location 124,490,256 - 124,657,794
singlet/doubletdoublet
Overlap geneAbcb9, Ogfod2, Arl6ip4, Pitpnm2
Upstream geneMorn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b
Downstream geneMphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303B01.T7 (MSMg01no303_b01.b1)MSMg01-303B01.TJ (MSMg01no303_b01.g1)
ACCAG428763AG428764
length718716
length of high quality
(start - end)		633 (44 - 676)621 (73 - 693)
definitionCHROMAT_FILE: MSMg01no303_b01.b1 PHD_FILE: MSMg01no303_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:52 2005CHROMAT_FILE: MSMg01no303_b01.g1 PHD_FILE: MSMg01no303_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,490,256 - 124,490,850)(124,657,175 - 124,657,794)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTTTCC
CTTTCTCCCCGCCCCCCTTCCTGATGAGAAAATCAAACCTGGGACCTTGA
ACATGCCAGGCAAGCTCTCTCTACCAAATGAAAACAAAACTCTAAACAAG
GTAGGGTGTCATGGCAATTGGAAGGCTGAGGCAGGAGGATTGGCACAGTA
CTGCAGTCATCCTGGCCTTCAATTTGATGCCTTGTCTCAAAAGAATCTAA
GCCCTCTACTATTGAGCCTGTCTCCAAGACTTTGGTAGTGTTTTTGGTTT
CTAGTGTTTAAGACAGGGACTTCACATAGCACAGGCTGGCCTCCCGTTTG
AACAAGGATGACTTCCGGCCTCTGCGTGCTGAGATCAGGCTTGTGCCGAT
GCACTTCCTTCTCACACGGTGCTGAGGGTCAAACCCAGGGCTTCATTCAT
CTTAGGCGAGCTTGCTAGCAAATGATCCACTACATCCCCAGCCACTCAAT
GTATGAAATGGTTCACTTGTTTGTTTGTTTGTTTTGAGACAGGGTTTCTC
TGTGTAGCCCTGGCTGTCCTGGAACTCAATCTGTAGACAGGGCTGGCCTC
GAACTCAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTGGGATCAAAGGC
ATGTGCCACCACGCCTGG

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTGTCCTTGTAACTGTCTCTCTGGTTC
TTTAGTGTTTGCTACCAGCAGGAAAGAGCCTCACTTCTTCATTTACATGT
TTCTGACCTTCCTCTGCCTCTGCTGTGATGGGGCCTGTGGATGCCCTGCC
CCGCCCCGCCCCGCCCCGCCCACATCTTTAGCTCCTGGTTATGGTTCTTA
CCACCCCTGACACTCCTCTTGGCCTATTCTAGGCCTCTCCAGCACCCAGA
ACCCAGTTTCTCAGAGGGTGCCGTGCACCAGCCTCCTTTCCCCATGGAAA
AACAGCATTTGGTATGGAACCGCAGAGTACCAGGTGCTTGCCTGGAAGAG
CCCCGAGTACAGGGCTGTTAGGTTCTGACCCATGTCTGCCTTTCCATTTT
TTTTTTTTTTGTATGGAGATGTTAGGCCTCCAAAATGCTGAGCCTTACCC
ACCATGCTATTGGCGGTAGTGTAGGGGCTTGTCCCCAAACTGAAAGCTGA
GTCCCCTGGACACTGTAGGAGGGCCTTGGTTGGACACTGAGGTTCAAGAA
GAGGATCCGGGGTCCTCAGTGCTCTGGCTAACAGCTGTCCATGCGTCTTC
TTTCCACTTGAGGTTGGAAGGCACTGGGTACGCAGGAAGCCGGACCCAGT
TTCCTCCTGCAAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_b01.b1 MSMg01no303_b01.b1 CHROMAT_FILE:
MSMg01no303_b01.b1 PHD_FILE: MSMg01no303_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:52 2005
         (633 letters)



>mm_chr5_124490018_124491050
          Length = 1033

 Score = 1089 bits (563), Expect = 0.0
 Identities = 587/595 (98%)
 Strand = Plus / Plus

                                                                       
Query: 39  tctctctctctctctttccctttctccccgccccccttcctgatgagaaaatcaaacctg 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tctctctctctctctttccctttctccccgccccccttcctgatgagaaaatcaaacctg 298

                                                                       
Query: 99  ggaccttgaacatgccaggcaagctctctctaccaaatgaaaacaaaactctaaacaagg 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggaccttgaacatgccaggcaagctctctctaccaaatgaaaacaaaactctaaacaagg 358

                                                                       
Query: 159 tagggtgtcatggcaattggaaggctgaggcaggaggattggcacagtactgcagtcatc 218
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 359 tagggtgtcatggcaattggaaggctgaggcaggaggattggcacagtgctgcagtcatc 418

                                                                       
Query: 219 ctggccttcaatttgatgccttgtctcaaaagaatctaagccctctactattgagcctgt 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 419 ctggccttcaatttgatgccttgtctcaaaagaatctaagccctctactattgagcctgc 478

                                                                       
Query: 279 ctccaagactttggtagtgtttttggtttctagtgtttaagacagggacttcacatagca 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 479 ctccaagactttggtagtgtttttggtttctagtgtttaagacagggacttcacatagcg 538

                                                                       
Query: 339 caggctggcctcccgtttgaacaaggatgacttccggcctctgcgtgctgagatcaggct 398
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 caggctggcctcccgcttgaacaaggatgacttccggcctctgcgtgctgagatcaggct 598

                                                                       
Query: 399 tgtgccgatgcacttccttctcacacggtgctgagggtcaaacccagggcttcattcatc 458
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tgtgccgctgtacttccttctcacacggtgctgagggtcaaacccagggcttcattcatc 658

                                                                       
Query: 459 ttaggcgagcttgctagcaaatgatccactacatccccagccactcaatgtatgaaatgg 518
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttagacgagcttgctagcaaatgatccactacatccccagccactcaatgtatgaaatgg 718

                                                                       
Query: 519 ttcacttgtttgtttgtttgttttgagacagggtttctctgtgtagccctggctgtcctg 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttcacttgtttgtttgtttgttttgagacagggtttctctgtgtagccctggctgtcctg 778

                                                                  
Query: 579 gaactcaatctgtagacagggctggcctcgaactcagaaatccacctgtctctgc 633
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 779 gaactcaatctgtagacagggctggcctcgaactcagaaatccacctgcctctgc 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_b01.g1 MSMg01no303_b01.g1 CHROMAT_FILE:
MSMg01no303_b01.g1 PHD_FILE: MSMg01no303_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:52 2005
         (621 letters)



>mm_chr5_124657059_124658079
          Length = 1021

 Score = 1085 bits (561), Expect = 0.0
 Identities = 606/627 (96%), Gaps = 13/627 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtccttgtaactgtctctctggttctttagtgtttgctaccagcaggaaagagcctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 736 actgtccttgtaactgtctctctggttctttagtgtttgctaccagcaggaaggagcctc 677

                                                                       
Query: 61  acttcttcatttacatgtttctgaccttcctctgcctctgctgtgatggggcctgtgga- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 676 acttcttcatttacatgtttctgaccttcctctgcctctgctgtgatggggcctgtggat 617

                                                                       
Query: 120 ----tgccctgccccgccccgccccgccccgcccacatctttagctcctggttatggttc 175
               ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 616 gccctgccctgccccgccccgcccctccccgcccacatctttagctcctggttatggttc 557

                                                                       
Query: 176 ttaccacccctgacactcctcttggcctattctaggcctctccagcacccagaacccagt 235
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 556 ttaccacccctgacactcctcttggcctattccaggcctctccagcacccagaacccagt 497

                                                                       
Query: 236 ttctcagagggtgccgtgcaccagcctcctttccccatggaaaaacagcatttggtatgg 295
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 496 ttctcagagggtgccgtgcaccagcctcctttccccatggaagaacagcattcggtatgg 437

                                                                       
Query: 296 aaccgcagagtaccagg-tgcttgcctggaagagccccgagtacagggctgttaggttct 354
           |||||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 436 aaccgcagagtacc-ggatgcttgcctggaagagcccggagtacagtgctgttaggttct 378

                                                                       
Query: 355 gacccatgtctgcctttccattttttttttttttgtatggagatgttaggcctccaaaat 414
           ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||
Sbjct: 377 gacccatgtctgcctttcca------ttttttttgtatggagatgttaggcctccaaaat 324

                                                                       
Query: 415 gctgagccttacccaccatgctattggcggtagtgtaggggcttgtccccaaactgaaag 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gctgagccttacccaccatgctattggcggtagtgtaggggcttgtccccaaactgaaag 264

                                                                       
Query: 475 ctgagtcccctggacactgtaggagggccttggttggacactgaggttcaagaagaggat 534
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 263 ctgagtcccctggacactgtaggaggggcttggttggacactgaggttcaagaagaggat 204

                                                                       
Query: 535 ccggggtcctcagtgctctggctaacagctgtccatgcgtcttctttccacttgaggttg 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccggggtcctcagtgctctggctaacagctgtccatgcgtcttctttccacttgaggttg 144

                                      
Query: 595 gaaggcactgggtacgcaggaagccgg 621
           |||||||||||||||||||||||||||
Sbjct: 143 gaaggcactgggtacgcaggaagccgg 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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