Query= MSMg01no304_d11.b1 MSMg01no304_d11.b1 CHROMAT_FILE:
MSMg01no304_d11.b1 PHD_FILE: MSMg01no304_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:33 2005
(672 letters)
>mm_chr5_86377170_86378240
Length = 1071
Score = 673 bits (348), Expect = 0.0
Identities = 380/394 (96%), Gaps = 7/394 (1%)
Strand = Plus / Minus
Query: 279 gacacacacacattcactcatatacacacacacacatacacactctctatcaggcacact 338
|||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct: 1071 gacacacacacattcactcatatatacacacacacatacaca------atgaggcacact 1018
Query: 339 aacacaaacttagacactcagacttacacatacaatcagacacactagcacacaaagaca 398
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 1017 aacacaaacttagacactcagacttacacatacaatcagacacattagcacacaaaaaca 958
Query: 399 ctcattcacacacataccagacacattgacctacatacacagacactcagacacactcag 458
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 ctcattcgcacacataccagacacattgacctacatacacagacactcagacacactcag 898
Query: 459 ggactcactgacacatcctcacacaccactgcctacttgttctagttctctggagatctt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 ggactcactgacacatcctcacacaccactgcctacttgttctagttctctggagatctt 838
Query: 519 gaattagtcttcttagagaaggggaatggcacttgtattttcaatatgagttcacgagtt 578
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 837 gaattagtcttcctagagaaggggaacggcacttgtattttcaatatgagttcacgagtt 778
Query: 579 ctcattgggttattattttttttacatggttttctgaatcccatccctgtgacatgggtt 638
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ctcattgggttatta-tttttttacatggttttctgaatcccatccctgtgacatgggtt 719
Query: 639 catttaggagtgaacaagtcagagcccagcaatc 672
||||||||||||||||||||||||||||||||||
Sbjct: 718 catttaggagtgaacaagtcagagcccagcaatc 685
Score = 68.4 bits (35), Expect = 2e-15
Identities = 87/111 (78%), Gaps = 16/111 (14%)
Strand = Plus / Minus
Query: 202 cacacacacacacacacacacacacacacacataaacagctcacacaaactcatatacac 261
|||||||||||||||||||||||||||||||| | ||| |||||| || | |||| ||
Sbjct: 300 cacacacacacacacacacacacacacacacacacaca---cacacacacacgtatagac 244
Query: 262 attcattgacacagacagacacacacacattcactcatatacacacacaca 312
| || |||| ||||| ||||||||| ||| | |||||||||||
Sbjct: 243 a--ca----cacacacaga-acacacaca--cac----agacacacacaca 206
Score = 64.5 bits (33), Expect = 3e-14
Identities = 91/121 (75%), Gaps = 24/121 (19%)
Strand = Plus / Minus
Query: 203 acacacacacacacacacacacacacacacataaacagctcacacaaactcatatacaca 262
||||||||||||||||||||||||||||||| | ||| |||||| || |||||
Sbjct: 309 acacacacacacacacacacacacacacacacacaca---cacacacac------acaca 259
Query: 263 ttcattgacaca-g-acagacacacacacattcactcatatacacacacacacatacaca 320
|| |||| | | ||||||||||||| || | ||||||||||||| |||||
Sbjct: 258 --ca----cacacgtatagacacacacaca------caga-acacacacacacagacaca 212
Query: 321 c 321
|
Sbjct: 211 c 211
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 78
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 11
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no304_d11.g1 MSMg01no304_d11.g1 CHROMAT_FILE:
MSMg01no304_d11.g1 PHD_FILE: MSMg01no304_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:33 2005
(770 letters)
>mm_chr5_86228837_86230006
Length = 1170
Score = 1427 bits (738), Expect = 0.0
Identities = 763/772 (98%), Gaps = 4/772 (0%)
Strand = Plus / Plus
Query: 1 aggaaatactgtgtgatggagattttccctttaattctaaatgtggagattagattggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaaatactgtgtgatggagattttccctttaattctaaatgtggagattagattggct 260
Query: 61 gcatcttataaaactttctaattccataaaaattcatagattgaaaagcttttctgtaat 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gcatcttataaaactttctaattccataaaaattcatagattg-aaagcttttctgtaat 319
Query: 121 ttatgtggtcctcctagcataaagactatttgtattgccatttcaaatctttcaaactgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttatgtggtcctcctagcataaagactatttgtattgccatttcaaatctttcaaactgc 379
Query: 181 tttga--tttttttttttacgggttaccattttaaagttttatttcctcttgtctttcac 238
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttgatttttttttttttacgggttaccattttaaagttttatttcctcttgtctttcac 439
Query: 239 atttcaacacttattaaatgagtccactctacagaaagggaacacagagagagaaaaaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 440 atttcaacacttattaaatgagtccactctacagaaagggaacacagagagag-aaaaaa 498
Query: 299 tctaaattagaatagagctaatttaatgagaaagtatgcccagatgtcacagccaaaaca 358
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 499 tctaaattagaatagagctaaggcaatgagaaaatatgcccagatgtcacagccaaaaca 558
Query: 359 tttgaaggaacattagcttagtcaataaataatgcaatccagaaaatcagcatagacatt 418
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttgaaggaatattagcttagtcaataaataatgcaatccagaaaatcagcatagacatt 618
Query: 419 tgagttaatttaaagcacattcttctaataagtgtttcctggggtgatatggggaaaggt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgagttaatttaaagcacattcttctaataagtgtttcctggggtgatatggggaaaggt 678
Query: 479 tgttctcaagatattttcttcatatgtcaacatctatattcccccttccttcttatcatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgttctcaagatattttcttcatatgtcaacatctatattcccccttccttcttatcatt 738
Query: 539 tgaatgcatgttgtcggttgtggtgatctttttgtttgtttgttttaatcaattcaaacc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaatgcatgttgtcggttgtggtgatctttttgtttgtttgttttaatcaattcaaacc 798
Query: 599 tgttgattgctcatctgctcaggctccacccagtgtggaatccagtctccttctggctac 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tgttgattgctcatctgctcaggctccacccagtgtggaatccagtctccttctggctac 858
Query: 659 atcaagaagtgagtctccttttgattgccttcaaatcaatatatagaactttccactcct 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 atcaagaagtgagtctccttttgattgccttcaaatcaatatatagaactttccactcct 918
Query: 719 tcagcagcatgcttctcaccatgatgataatggactgaacctctgaaactgt 770
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tcagcagcatgcttctcaccatgatgataatggactgaacctctgaaactgt 970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 770
Length of database: 1170
Length adjustment: 10
Effective length of query: 760
Effective length of database: 1160
Effective search space: 881600
Effective search space used: 881600
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
