BAC Information

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BAC

Clone NameMSMg01-304M04
Chromosome5 (Build37)
Map Location 5,008,145 - 5,008,428
singlet/doubletsinglet
Overlap genePftk1
Upstream geneAkap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304M04.T7 (MSMg01no304_m04.b1)MSMg01-304M04.TJ (MSMg01no304_m04.g1)
ACCAG429943AG429944
length1,3661,349
length of high quality
(start - end)
709 (94 - 802)284 (129 - 412)
definitionCHROMAT_FILE: MSMg01no304_m04.b1 PHD_FILE: MSMg01no304_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:50 2005CHROMAT_FILE: MSMg01no304_m04.g1 PHD_FILE: MSMg01no304_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:43:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCAGGTCANNNNNNNNCCATTGGGCGCTATAGACTCCTATAGGGAGA
GGATCCGCGGAATTCTCACCTGAGGAATACCCCATGTAATGAGAAGCACC
TGAAAAAATGCTCAGCATCCTTAACCTTCAGGGAAATACAAATCAAAACA
ACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTTATAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAAGCTTGTACAAAAACTCTGGAAATCAGTCTGG
CTGTTCCTCAGAAAATTGGACATAGTACTACGGGAGGATCCCGCAATACC
TCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAATAAGGACACAT
GCTATACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
TTACACAATGGAGTACTACTCAGGTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATTATCCTGAGTGAGGTAACC
CAATGACAAGAGAACTCACATGATCTTTACTCACTGATAAGTGGATATTA
ACTCAGAAACTTAGAATACCCAAGTTACATTTTGCAAAACACATGAAACT
CAAGAAGAACGAAGACCAAAGTGTGGACACTTTGCCCCTCCTTAGAATGG
GGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGCTTGGAGCTGAG
ACGTAAGGATGGACCATCCAGAGACTATGCTGGTGATTCTGCTTCCCCAC
ACCATTTTCTGCCGAAGAAAGAGAACAATGAGATTATGGAATTCTCAGTC
CGTAGGCCCCCACTATGTTCCATGGGGTGCCAGGAACCACTTTTATTTTT
AGTCTCACTCACGTTCTTTAAAGAAGAAGTGTTGGCAATTTTGTTATTTT
TGAAACCACCCCCGTGCTTGAATGGGGAGAACTTATCTCATGTTTCTATT
ACATGACAAAGTAATAACCCGATTTCTTCTTGATACTTTGTAAACCCATT
CCCCTTTATTATATCGCATTATAACTTCCGTACTTAATAACAACTATTTC
TTGCGAATTCTCCCTTATTAATGATACACTCCTCCATATATAACCTTTTA
TACTTTCACTTATCCTCTTTTATTAAATCAAATATCTATCTATGTCTTAT
CTCNATTATATTTTTACGTAACCCTCTTCTTTACATTATCCTTCTTTCTC
GACTTTATTANNNNCTTTTAAATAATGNGAGCTAGTGTGTGGTTGTGTGT
TGTGTGTTTTTTTTGG
NNCCCAATCATNTNNNNAAGATGGGATGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAGAATGATTTAATG
GGAAATTGTAGGTGGAAGGCCTTTCAATTTGCTGTACATGCCAACATGGT
TGTGGTGCGCTGAAAATGAATTAATTGGATTTGTTAAAAATGTGACCTGC
TCTCTCCCACAAAAGAGGGAGGATACACAAAGGAAGGAAGACAGAAAGAC
TTTCACAGACTGATCTTTGCTGCCTTGTACATTTTTAATAAAGACTCAGT
ATGTGGGAAGTAATTATAATGACTATCTTCAGTTACAAGATATTAATTTT
GTGCTCCAAGGTTATTAACCACCTTTAAACATACGGTTAACAGGCAAGTG
AATGGGCTTAATCCTGATATTAAGACACAAAACAAACCAAATAATCCGAT
GTTTCACGACTTTCAAAGTTGATTGTCTCCTTGACAAGGCTTTACCAGAG
GCCAGATATACAACTGCCATTTTAGAAAAGAGGTGCTGGCAGTCTCCAGC
AGATGCCTGTTGAAGGAGACTTAATCCCCATTTAATAGCCATTCCTATTT
AGGCCAGATATAAAAGGTCACTGAGGAAAGAGGTTTATCTCCCATTGATT
CCACCTTATTGAGTTTGTCCAGTGTCCTTATCCAATGATCAACAAATCCT
AAAAGGGGACTTCTTAACATACTGTATAGCTACATTTGCCAATGTCAACA
ATCCAGATGAGAATATAAAGTATTTAAGATTAATGACCTTTGATGTCCAA
AAATCCCAGACCAATTCTTTTGATTTTTTTTTCCCATTCTTCCCGCGAAA
AAAAACGGTCCAATAATTCTTAAACAATCCTCTTTCTTAAAAAAAAAAAT
TTCCTTTTCTTCTTTATCCAGGACTTTTTTTCTTTTAAACAGGTTATTAT
ATCCCGGGTCCGTGCTAAAAAAAAATGACCATCCCCCCTTCTTTGGGGTA
CACGTTTTTACTATTTTTCTTTTACAAAAAAAAACCTGTATATATATTCC
TACTCCCACTCAGAATTTGCATAACTATTCCTTCTATCATTAACAATTTC
CTTTACCCCTGCAACACTCCATCTCTCTCTATATTACAATACTTTTTATT
CTTTTTTACCTTTACAAACTGCTACTACCTGTCCACTCTTCTCTCACTAA
CATTAATTTATANTAACAACCNTATTCTCTTCTATTTTNCCTTTNNCTTG
CACTGTCTTCCTCATATTTCATTATCTTCGCTCATCCTAACATACATTNA
TNTTNTNGTCGGGGGGGGNNNNANATATATAACGAAATCTTTCACAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_m04.g1 MSMg01no304_m04.g1 CHROMAT_FILE:
MSMg01no304_m04.g1 PHD_FILE: MSMg01no304_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:43:50 2005
         (284 letters)



>mm_chr5_5007945_5008628
          Length = 684

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgctgtacatgccaacatggttgtggtgcgctgaaaatgaattaattggatttgttaaa 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgctgtacatgccaacatggctgtggtgcgctgaaaatgaattaattggatttgttaaa 260

                                                                       
Query: 61  aatgtgacctgctctctcccacaaaagagggaggatacacaaaggaaggaagacagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtgacctgctctctcccacaaaagagggaggatacacaaaggaaggaagacagaaag 320

                                                                       
Query: 121 actttcacagactgatctttgctgccttgtacatttttaataaagactcagtatgtggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actttcacagactgatctttgctgccttgtacatttttaataaagactcagtatgtggga 380

                                                                       
Query: 181 agtaattataatgactatcttcagttacaagatattaattttgtgctccaaggttattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaattataatgactatcttcagttacaagatattaattttgtgctccaaggttattaa 440

                                                       
Query: 241 ccacctttaaacatacggttaacaggcaagtgaatgggcttaat 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacctttaaacatacggttaacaggcaagtgaatgggcttaat 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)