BAC Information

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BAC

Clone NameMSMg01-305E05
Chromosome5 (Build37)
Map Location 18,722,343 - 18,722,714
singlet/doubletsinglet
Overlap gene4921504A21Rik
Upstream geneGnai1, LOC100041818, LOC668167
Downstream geneMagi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305E05.T7 (MSMg01no305_e05.b1)MSMg01-305E05.TJ (MSMg01no305_e05.g1)
ACCAG430294AG430295
length1,2421,239
length of high quality
(start - end)
414 (45 - 458)383 (72 - 454)
definitionCHROMAT_FILE: MSMg01no305_e05.b1 PHD_FILE: MSMg01no305_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:58 2005CHROMAT_FILE: MSMg01no305_e05.g1 PHD_FILE: MSMg01no305_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:44:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCCGCTCAGTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGATGCACTTGGACTTTGTACAAGGATATAAGAATGGATCAATT
CACATTCTTCTACATGATAACCTCCAGGTGTGCCAGCACCATTTGTTGAA
AATAATGTCGTTTTTCCACTGGATTGTTTTAGGTCCTTTGTAAAAGATCA
AGTGACCATGGTATGTGGATTCATTTCTGGGTCTTCAATTCTATTCCATT
GATCTACCTGTCTGTTGCTGTACCAGTACCATGCAGTTTTTAATCACAAT
TGCTCTGTAGTACAGCTTTAGATCAGGCATGGTGATTCCACCAGAGGTTC
TTTTATTGTTGAGAATAATTTTTGCTACCCTAGGTTTTTTGTTATTCCAG
TTTTTTTTGCAAATTGCCCTTTCTAAATCTGTGAAGAATTGAGTTGGAAT
TTTTTTTTTTCCCCCCCCCCCCCNGNAGATTCCTTTCAAAAAAAAAAAAG
AGGTTACTATNTTGATCCTGCCNATCCATGAGCATGGGAGATCATTCCAT
CTTCTGAGATCTTCAATTTCTTTCTTCAGAGACTTGAAGTTCTTAACATA
CAGATCTTTCACTTCCTTAGTTGGAGTCACACCCTTTACTTTTTATTATT
TGTGACTATTGTGAAGTGTGTTGTTTCCCTAATTTCTTTCTCAGCCTGTT
TATCCTTTGTGTAGAGAAAGGCTACAGATTTGTTTGAGATAATATTATAT
TCAGCTACTGCACTAATTCTGTTTATCTTTATTAGGAGATCTCTGGTGAA
TTTTTAAGACCAACTATATAATATAAAATATCTGCAAATAATGATATTTT
TATTTCTTCCTTTCTAAATTCAGCGCCTTGATCTCCTTTTGTTTTTTAAT
TCTCCGATTCGACTTATAGTTTTCTATTTAAATTTATGTAAAATATAGAT
ACTTTGTCTTATACTAATTTAATGTGACAATACCATCACTCCTCCATTTA
TCCTATATTTATCTATGGTTTTCTTACTTACTTTTATCAATTCTTTTTTA
TCCTATAAAATTAATCTTCTTATCCCCCCCCCCCCTGTAATTTTATTTTC
TGTTATCTTCTTTCTTTTCTATCTACTCTCTACATATATTTTTTTATACA
CTCTTACTTATCTTTCTATTTTTCTTTCTTTTTTCCACACAACTTTACTT
TATCTAACTATCCTTTTTCTACAATATATTTTAACTATCTTT
NNNCCTCATCATGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTTAAAATAAGAAATTAGATTCTTAAAT
TTGAGGTAGCCTCAGATCAGAGTCTGAGTGATGCTGGCGATATGGCGATA
GTGCTGGTCAGGGCAGCTGGTGATGCCCTTTGTAGTGGGTCCATGGTCAT
ATTTATCACATGCTTATGCCTACTTAGAAACAGTAACCTAGGTTATGTTG
ATTTGCTTTGTATATTGTAGACCCTCAGATTTTTAATCCAACTATATCTA
ACAGTAAATTTTTACCTATTACCAACCTCAGCAGAAAAAAAATTTCATCT
AAAAGTTCATATAGATTTCAAGTTTCAGTCTAGAGTTGGCTCACATTCTT
TTTCTTATAGATTAGTACTTTTTCCTCCAAGATTTGCCTCCATTGTGTTC
TTTTTTTTTCCCCCCCCCCANNGGANAGCTTTCTTCCCTAAAAGAAGGGT
TTANNATTTAGTTCTTTGGAAATGTGTGTCATATATTTTCCTGTGTATTT
GAACATATGCTTAAATACCAACCCCCACCTGCCCTGCTGCCCACTATGAC
TCCTGCCCAACTCCATGCTCCTGTCTTATTTTTGTTAATTACCTCCAAGT
GCAATTCGTTCTATGGATGTGCTCCTGAGTCTGCAGCCATCAGTGGTGGC
ATGGTTACCCTAATAGCAGCCATGTATCCAGAGCATGTAACATGCCTCAG
AAGTCATCACTGTCAAGAATCCCTCCCCCTAGGGGTGGGCCCAAGGGGCC
TTCCCACACATGTTGAAACTCTTGACAGGCTTGTTATTATGCAAGTCATC
TGATGGTATCCCCAGTGCTTGGAATTGATTGGAACTCACTTGTGTCATTG
TTGGTCCATCCAATGAATGCCGGCAACCAAAATTGGACCCTGCGAACAAC
ATTAATAACCAGTTATGGTCCTGTTCCAACGCCCAATTCACAACCCCATC
TTTTTGCCTCTCTTTTTCTACCTAAACAACACCAATCATTATCTTTCATT
ATCATTTATCTAATTTCTCACACTTCTTCTTTTCCTGGAAACGGCTATAA
CACTTTCTCTTCAACACTATCCTTTTTTTCGGCTTCTACAATTTTTTTAT
ACATCCTCTAACCATTCTCTATTCCTTCCCGTTCAACACCTCTTATATCT
TTATCAACTTCCTTAACAANCACATACTCTTATTCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_e05.g1 MSMg01no305_e05.g1 CHROMAT_FILE:
MSMg01no305_e05.g1 PHD_FILE: MSMg01no305_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:44:58 2005
         (383 letters)



>mm_chr5_18722072_18722854
          Length = 783

 Score =  661 bits (342), Expect = 0.0
 Identities = 367/380 (96%), Gaps = 8/380 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaaaataagaaattagattcttaaatttgaggtagcctcagatcagagtctgagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atttaaaataagaaattagattcttaaatttgaggtagcctcagatcagagtctgagtga 584

                                                                       
Query: 61  tgctggcgatatggcgatagtgctggtcagggcagctggtgatgccctttgtagtgggtc 120
           |||        |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 583 tgc--------tggcgatagtgctggtcagggcagctagtgatgccctttgtagtgggtc 532

                                                                       
Query: 121 catggtcatatttatcacatgcttatgcctacttagaaacagtaacctaggttatgttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 catggtcatatttatcacatgcttatgcctacttagaaacagtaacctaggttatgttga 472

                                                                       
Query: 181 tttgctttgtatattgtagaccctcagatttttaatccaactatatctaacagtaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tttgctttgtatattgtagaccctcagatttttaatccaactatatctaacagtaaattt 412

                                                                       
Query: 241 ttacctattaccaacctcagcagaaaaaaaatttcatctaaaagttcatatagatttcaa 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 411 ttacctattaccaacctcagcagaaaaaaattttcatctaaaagttcatatagatttcaa 352

                                                                       
Query: 301 gtttcagtctagagttggctcacattctttttcttatagattagtactttttcctccaag 360
           |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||
Sbjct: 351 gtttcagtctagagttggctcacattcttactcctatagattagtactttttcctccaag 292

                               
Query: 361 atttgcctccattgtgttct 380
           ||||||||||||||||||||
Sbjct: 291 atttgcctccattgtgttct 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)