BAC Information

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BAC

Clone NameMSMg01-305G19
Chromosome5 (Build37)
Map Location 106,069,331 - 106,069,759
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041199, LOC666726, C230055K05Rik, LOC100041216, Abcg3, LOC626471, EG545790, 5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c
Downstream geneLrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305G19.T7 (MSMg01no305_g19.b1)MSMg01-305G19.TJ (MSMg01no305_g19.g1)
ACCAG430400AG430401
length1,2081,288
length of high quality
(start - end)
415 (42 - 456)379 (83 - 461)
definitionCHROMAT_FILE: MSMg01no305_g19.b1 PHD_FILE: MSMg01no305_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:20 2005CHROMAT_FILE: MSMg01no305_g19.g1 PHD_FILE: MSMg01no305_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGCCCGCATTGGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCCAAGCTGGACCTAGCCTAGGTTATTGGGTAAGAAGAGAATGTTTGAAA
AATGAAGTTGGTAACTGACAAAATGGTTTGGTTTTGTGATATGGAAGTAA
GTGAGCTTAATATATTTTGTTTTAGAAGCGTTTTCTGGCAGGAGTGGACT
GTGGAACTTTACTGAGCCAGCATTACAAGGGTAGCAGCAGACCTGGGCAG
GTAGGCTGTTTTAGAGCGATCCTTTGTTGGCAGCCATTGTGTTTAAGGAT
GGAACAGACCTGATGTGCTGTTTCATTTTGCCAAAGTTTGGCTTCTCCTT
TTGAAATCACCAACCATCCCAGCTGGCAGCAGGCTTTGTCAGCAGGTTTG
CCTGGATCAACACCTATGAACATGAGAAAAGCCCATTGAATTCCTTCCTT
TTTTTTTTCCCCCCCCGCNGAAGAATCACCTCTTTTCCAAAAAAGGGGAC
AGTGGAGGAGCTAGTGGTCCGTTCTACACTCCCAACAAGTTCAATATGAT
ATCCTGGGATTTCTGCAAAGATATATCTGTGCCACGCTGTTCTAGGGTGG
CTCATGCTATTTGCCCAGTTTTTGACAATGCAGTTGGAAGTCAGGGCGAT
GACAGAGATGGGTGAAGGGGACGACGTGAGGACTGGAAGGGGGATGTGAT
GTGTCTCTGCCCAATACATCCTCCTCACTTTGGTTTTATTTTTGAGGCGC
ACTCCTATTTATTTTTGACACTTAGAGGAGGTATTGAATTTGACCTCAAC
GTGCTGCGTCTGCTAGAGTTATACAGATATACCATCACTTGACGTATACT
TTAAATATTCTGTTTTCCACTAAACTCTATAATCCCTCCCTCTTTTTGCT
TTTTCGTACCTCCTTCCTTCTGAACTTGTTGACCCATAGTCTTTTTCTGT
TTTTTCCCTCACGATGTCCTTTTAATCCTCTCCCTTGATCACCTCCCTCT
CTATTTTTCTCCTCTATACTCTCTTGTAACTCCCATTAAATATTTCTACC
TTTTATCACCTGCCCCCCCACACCCACTTCTACAAACATATTCTTCCCCT
CATTTCTCTTCTTCTACCCCATTCTACCCTTTCCTCTCATTAACGTTTTT
TCTCCTTCTCATACTCCTCCCTTCAATGTTTTTCCACTACCCTTCTCTTT
GTTTTTCT
NNGGATANNNNNNNGCGTGATGTGAGCCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGA
ATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGATTTTTGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGTTTTTTCTACCCCCCCCCCAANAGAGGACTCCCCCCC
CAAAAAAAAAGGAGGCTACNCNNTGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACT
GATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATA
ATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACA
CTATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGTAAGGAGTTACA
GAGACGGAGTTTGGAGCTGAGATGAAACGGATGGACCATGTAGAGACTGC
CATATCCCAGGGACCCACCCCATAATCAGCATCCAAACGCTGACCCCATT
GCATACACTAGCAAGATTTTATTGAAAGGACCCAAATGTACTTGTCTCTG
TGAAACTATTCGGGGGCCCACAAACACAGAAGGGGAAGCTTCCCAGTCGC
TAATGGATGGATCAAAGGCTCCCAAGGGAGAAATTAAGAAAGTACCCAGG
AGTAAAGGATTCGCAACCCTATGGGGGAACACCTTTGGGCTTACCCTACC
CCCGGACTTCTTGACCCTACGGATATAATTTAAAGAAGGCTTAACCGCCC
TCTCTGGGAAAAAAGCCCCTTGAAATGTCAACATTATGCCCCCCCAAGGG
GAACACCCGCCAAAATGGGGTAGGGTGTGCCCCCAAATACACACTCNCCT
CAACTCTCCCCTCTGGCTACCCTCATACTCTTCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_g19.b1 MSMg01no305_g19.b1 CHROMAT_FILE:
MSMg01no305_g19.b1 PHD_FILE: MSMg01no305_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:20 2005
         (415 letters)



>mm_chr5_106069209_106070024
          Length = 816

 Score =  710 bits (367), Expect = 0.0
 Identities = 407/429 (94%), Gaps = 19/429 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcc-caagctggacctagcctaggttattgggtaagaagagaatgtttgaaaaat 62
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggaattccacaagctggacctagcctaggttattgggtaagaagagaatgtttgaaaaat 492

                                                                       
Query: 63  gaagttggtaactgacaaaatggtttggttttgtgatatggaagtaagtgagcttaatat 122
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 491 gaagttggtaactgacaaaatggtttggttttgtgatatggaaataagtgagcttaatat 432

                                                                       
Query: 123 attttgttttagaagcgttttctggcaggagtggactgtggaactttactgagccagcat 182
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 attttgttttagaagcgttttctggcaggagtggactgtggagctttactgagccagcat 372

                                                                       
Query: 183 tacaagggtagcagcagacctgggcaggtaggctgttttagagcgatcctttgttggcag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tacaagggtagcagcagacctgggcaggtaggctgttttagagcgatcctttgttggcag 312

                                                                       
Query: 243 ccattgtgtttaaggatggaacagacctgatgtgctgtttcattttgccaaagtttggct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccattgtgtttaaggatggaacagacctgatgtgctgtttcattttgccaaagtttggct 252

                                                                       
Query: 303 tctccttttgaaatcaccaaccatcccagctggcagcaggctttgtc--ag--cagg--t 356
           |||||||||||||||||||||||||||||||||||||||||||||||  ||  ||||  |
Sbjct: 251 tctccttttgaaatcaccaaccatcccagctggcagcaggctttgtcaaagcccaggctt 192

                                                                       
Query: 357 t-----------tgcctggatcaacacctatgaacatgagaaaagcccattgaattcctt 405
           |           |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 191 tgtcagcaggggtgcctggatcaacacctatgaacacgagaaaagcccattgaattcctt 132

                    
Query: 406 cctt-tttt 413
           |||| ||||
Sbjct: 131 ccttctttt 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 816
Length adjustment: 9
Effective length of query: 406
Effective length of database: 807
Effective search space:   327642
Effective search space used:   327642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)