Query= MSMg01no306_b05.b1 MSMg01no306_b05.b1 CHROMAT_FILE:
MSMg01no306_b05.b1 PHD_FILE: MSMg01no306_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:44 2005
(248 letters)
>mm_chr5_59660103_59660750
Length = 648
Score = 449 bits (232), Expect = e-131
Identities = 244/248 (98%)
Strand = Plus / Plus
Query: 1 gacatgacacgatggatgtcatagaattagtctataggaataggatgtttcttggtaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gacatgacacgatggatgtcatagaattagtctataggaataggatgtttcttggtaggg 260
Query: 61 ggtgattatgactatgagtggaaatgttgaactttgtgatttagagacatatctctggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgattatgactatgagtggaaatgttgaactttgtgatttagagacatatctctggga 320
Query: 121 ttaattcgggaggagagtttggaaattactatcatgagagacaagaatgctacctaaaat 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaattcggaaggagagtttggaaattactatcatgagagacaagaatgctacctaaaat 380
Query: 181 agacgctactacagcacgtctgctggtttactgtgtaaatcggatgacatctcagaatct 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 agacgctactacagcacgtcggctggtttactgtgtaaatcggatgacatctcagaagct 440
Query: 241 ttctattt 248
|| |||||
Sbjct: 441 ttatattt 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no306_b05.g1 MSMg01no306_b05.g1 CHROMAT_FILE:
MSMg01no306_b05.g1 PHD_FILE: MSMg01no306_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:44 2005
(489 letters)
>mm_chr5_59808269_59809163
Length = 895
Score = 862 bits (446), Expect = 0.0
Identities = 463/472 (98%), Gaps = 6/472 (1%)
Strand = Plus / Minus
Query: 4 agttatagctacaatttctgttctctgttaaactctgtattttgcatgaacagaaagata 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agttatagctacaatttctgttctctgttaaactctgtattttgcatgaacagaaagata 413
Query: 64 aactataacttaagcagaaagtggggtaagagtgattaaaactatatcacttaatatgca 123
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 412 aactataacttaagcagaaagtggggtgagagtgattaaaactatatcacttaatatgca 353
Query: 124 gaccatttcattctttattattcttatttatttctaaaaaattcatattatgggtgcaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaccatttcattctttattattcttatttatttctaaaaaattcatattatgggtgcaca 293
Query: 184 tctataattcccctcttccctttctt------tcctacccaacccccttaaaatcattaa 237
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 292 tctataattcccctctttcctttctttccaactcctacccaacccccttaaaatcattaa 233
Query: 238 ctctttcttctttaattaatattgctagaatgtatgtacatatacatatgtacacataat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ctctttcttctttaattaatattgctagaatgtatgtacatatacatatgtacacataat 173
Query: 298 acactgaatctatttagtattgcttgtatgtatatgtttctagatctgatgctttcttag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 acactgaatctatttagtattgcttgtatgtatatgtttctagatctgatgctttcttag 113
Query: 358 tgaatagtcaattaaggagttcatcccttggaaagagtagagtcctttctatctgcactc 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 112 tgaatagtcaattaaggagttcatcccttggaaagagtagagtcctttctatcttcactc 53
Query: 418 atgaattgcctatggttcttcctttatgatgagcccttgtgagagtttccca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 atgaattgcctatggttcttcctttatgatgagcccttgtgagagtttccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 895
Length adjustment: 10
Effective length of query: 479
Effective length of database: 885
Effective search space: 423915
Effective search space used: 423915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
