BAC Information

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BAC

Clone NameMSMg01-306D08
Chromosome5 (Build37)
Map Location 84,270,627 - 84,271,126
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2, LOC100039608
Downstream geneLOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306D08.T7 (MSMg01no306_d08.b1)MSMg01-306D08.TJ (MSMg01no306_d08.g1)
ACCAG430938AG430939
length737737
length of high quality
(start - end)
503 (46 - 548)612 (77 - 688)
definitionCHROMAT_FILE: MSMg01no306_d08.b1 PHD_FILE: MSMg01no306_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:55 2005CHROMAT_FILE: MSMg01no306_d08.g1 PHD_FILE: MSMg01no306_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:46:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGTTTTCATATGGGCTAGCTAAAATATACAACTCCTTTCATAA
GTGTTGAATTACCTATGGATCTTTATGCACATCTGTAACATTTTGCCTTA
CAGTTCTTTTGATGTATGGCTACATGTGATATACCAAGCCATTTGATAGC
TCTATGTTCAGACTTTTGTGCAATCTCTCTACTCTCTTCCACATTAAATC
CCACCAATACTCTTTAGGGTAGGATTTTTACCCCTAGCAATCTTGTCAAC
AATTTTGTACATTTTACTTAATGAAAATCTTTCTGGCTGGGGAAAGAAAG
GATGCAAATGTGGCCTTAATTTGCATGTGCCAAATAGTCAAAGAGTTTGA
GTTTTATAAGTTTATTCACTATTTTAACTTATCTTTTATAACTAATATTT
TGCTGATTTCTTCATTCCACATACTGAGCTGTTTGAGGTTATTTTTGTTG
CTGTTATTTAGATTTTGAGTCTATAAATATTCCATATGTTAATTATGTCA
GAACTTTAGGTTTTAATTCCATTATCAGGTCTGTGTCTTGACTTTTCTTT
ACTTCTTTGATGAGCAGAAGATTTTGTTTGTATGCAATTCACATTTCCAT
CCAACTATTAGTATTTTTGGAATAGATTAATTCTTGTTTTCTGATTGATT
TCACGATATGCAAAATTATTCTGAAGCCTCTTTGTCC
CCATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGAAGAGAATTGGTATTAGGTC
TTCTTTGAAGGTTTGATAGAACGCTCCACTAAAACCATCTGGTCCTGGGC
TTTTTTTTGGTTGGGAGTTTTTAATGACTGCTTCTATTTCTTTAGGGGTT
ATGGGACTGTTTGGATGGTTTATCTGATCCTGATTTAACTTTGGTAACTG
GTATCTGTCTAGAAAATTGTCAGCTTCATCCAGATTTTCAAGTTTTGTTG
AGTATAGGCTTTTGTAGAAGGAATTGATGGTTTTTTAAATTTCTTCAGTT
GCTGTTGTTATATCCCCCTTTTCAGTTTTGATTTTAATGATCTGTATACT
GACTCTGTGCCCTCTAGTTATTCTGGCTAAAGGTTTATCTATCTTGTTGA
TTTTCTAAAAAATACAAAACAAAACAAAACAAAACAAAACAAAACAAAAC
AAAACCCCAGCTCCTGGTTTTGTTGATACTTTGAATAGTTCTTTTTGTTT
CTACTTGGTTGATTTCAACCCAGAGTTTGATTATTTCCTGCCTTCTACTC
CTCCTGGGCGTATTTGCTTCTTTTTGTTCTAGATTTTTCAATTGTTCTGT
CAAGCTGCCAGTGTATACTCTCTCCAGTTTCTTTTTGGAGGCACTTACAG
GTATGAGCTTTCCCCTTATAACTGCTCTCATTGCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_d08.b1 MSMg01no306_d08.b1 CHROMAT_FILE:
MSMg01no306_d08.b1 PHD_FILE: MSMg01no306_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:46:55 2005
         (503 letters)



>mm_chr5_84270423_84271326
          Length = 904

 Score =  920 bits (476), Expect = 0.0
 Identities = 494/500 (98%), Gaps = 1/500 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgt-tttcatatgggctagctaaaatatacaactcctttcataagtgttgaa 63
           ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgtcttttatatgggctagcttaaatatacaactcctttcataagtgttgaa 264

                                                                       
Query: 64  ttacctatggatctttatgcacatctgtaacattttgccttacagttcttttgatgtatg 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 ttacctatggatctttatgcacatctgtaacattttgccttagagttcttttgatgtatg 324

                                                                       
Query: 124 gctacatgtgatataccaagccatttgatagctctatgttcagacttttgtgcaatctct 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctacatgtgatataccaaaccatttgatagctctatgttcagacttttgtgcaatctct 384

                                                                       
Query: 184 ctactctcttccacattaaatcccaccaatactctttagggtaggatttttacccctagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctactctcttccacattaaatcccaccaatactctttagggtaggatttttacccctagc 444

                                                                       
Query: 244 aatcttgtcaacaattttgtacattttacttaatgaaaatctttctggctggggaaagaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatcttgtcaacaattttgtacattttacttaatgaaaatctttctggctggggaaagaa 504

                                                                       
Query: 304 aggatgcaaatgtggccttaatttgcatgtgccaaatagtcaaagagtttgagttttata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggatgcaaatgtggccttaatttgcatgtgccaaatagtcaaagagtttgagttttata 564

                                                                       
Query: 364 agtttattcactattttaacttatcttttataactaatattttgctgatttcttcattcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtttattcactattttaacttatcttttataactaatattttgctgatttcttcattcc 624

                                                                       
Query: 424 acatactgagctgtttgaggttatttttgttgctgttatttagattttgagtctataaat 483
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acatactgagttgtttgaggttatttttgttgctgttatttagattttgagtctataaat 684

                               
Query: 484 attccatatgttaattatgt 503
           ||||||||||||||||||||
Sbjct: 685 attccatatgttaattatgt 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 904
Length adjustment: 10
Effective length of query: 493
Effective length of database: 894
Effective search space:   440742
Effective search space used:   440742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)