BAC Information

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BAC

Clone NameMSMg01-306I10
Chromosome5 (Build37)
Map Location 111,396,220 - 111,565,573
singlet/doubletdoublet
Overlap geneTtc28
Upstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
Downstream genePitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306I10.T7 (MSMg01no306_i10.b1)MSMg01-306I10.TJ (MSMg01no306_i10.g1)
ACCAG431161AG431162
length763761
length of high quality
(start - end)
327 (47 - 373)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no306_i10.b1 PHD_FILE: MSMg01no306_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:20 2005CHROMAT_FILE: MSMg01no306_i10.g1 PHD_FILE: MSMg01no306_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,565,254 - 111,565,573)(111,396,220 - 111,396,515)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACCAGACATTCATGGCCCAGAGGCCTCACAAGCTAACTTCAGT
GTGAGGGTGCTCTGTGTAACGTTCTGCATGAAGACATTCATAAAAAGACC
ATTTTGTTGTTCTTAATCTTCTTCTTTTCATGATTCAAAATGCTGCCTTT
CTCTCAAGATTGTAAATTTAGTTTCCTTATTCTCTTTGTATTTTCATTCT
GTATGTCTGTGTGGTGTACGCACATGTGTGTGCATTCACATGCGTGTGCA
TTCACATGTGTGTGTATTCACATATGTGTGCACATGTTTGTGTGAAGGTA
TATCAATGTTAATATCATTATTAAAGTGAAACGTTTTAACTCAAATTCAA
GTTTAAACACTCTGTCATGTGAAGAATCAATCAGAAGTTAGCCCTTAACT
GAAACAGACAAACTTAACTATTAAAAGCACATGCTCTCTACCACAGATCT
TCAGACCCTAGGCTGGAGCCATTTACACATTCTAATACATAATGGGGGAG
GGGTAGTTAAGACAGGGTTTCTTTAGTTCTGACTGTCCTGGAACTTTCTC
TGCCTTGAACTCACGTAGGTCTGCCTGCCCATGCCTCTCAAGTGCTAGGA
TTAAACGTATGTGCCACGACTGCAGAGACACTTGCCACTACAAGTGCTAC
TCTGTCATCTGAACCACTGGAGGGTTACTTATGCCAACCGAGTTGGAGGT
TGTCTTAAATTAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGAGACCAGTTGAAGGACCAGTTGGAAA
GGGAAAATGAGGAAGGACTTTTAAGGGCTGGGCATAGAGCTCAGTGCCAC
CTCCTTGCCAATCAGGCACAGCCCCTCCTTAATCCCCAGCACTGGTAACC
AGCCCCCCCCCCAAAAAAAAGAGAAAAATAACAGAGGAAGAAAAAAAACC
CATTTATTTCAGATATAAATTCCTTCTTGTTTGTCTGTTGTTTTGAAATA
GAGCTATACTCTAGCCTGAGCAGACTCATGACAGCTCTACTGTCGCAAGT
CTGTAACTGTATTTTGATGTTCTGCCCGCCCCCCCACCTTACTATTTAGT
ATTACAGCGAACTGCCTACCTCTAGCTATTGAAAAAGAAAGTCGCTTCTG
GCATTCTGTGCCCTGCCAGCAGCTGCGTTCTGAGGCCTAGGTGGCAAGCG
TGGTTTTGTAGGGCTTTGTGGATCATTCTCCAAACGTGTCAGTGAGTTCT
TGTCCACATGCGCTCTTAGCTGAATGCAAAGCTCTTCATGATCCGAACTG
TCATTGCTTAATCTGGTAATCAGGATATTCATTTTTCTGACCAGTTCACG
CACCTTTAGAGCAGGAACACAAAGCTGTCTCTGGGTTCTCTCTTGGCCAG
AGTGGCAGCACTTTTAAAAAATCTGCATCTCGATGCTGTGACTGCCTCCC
TGAAGACAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_i10.b1 MSMg01no306_i10.b1 CHROMAT_FILE:
MSMg01no306_i10.b1 PHD_FILE: MSMg01no306_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:20 2005
         (327 letters)



>mm_chr5_111565171_111565897
          Length = 727

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccagacattcatggcccagaggcctcacaagctaacttcagtgtgagggtgc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaattccaccagacagtcatggcccagaggcctcacaagctaacttcagtgtgagggtgc 344

                                                                       
Query: 65  tctgtgtaacgttctgcatgaagacattcataaaaagaccattttgttgttcttaatctt 124
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tctgtgtaacgctctgaatgaagacattcataaaaagaccattttgttgttcttaatctt 284

                                                                       
Query: 125 cttcttttcatgattcaaaatgctgcctttctctcaagattgtaaatttagtttccttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cttcttttcatgattcaaaatgctgcctttctctcaagattgtaaatttagtttccttat 224

                                                                       
Query: 185 tctctttgtattttcattctgtatgtctgtgtggtgtacgcacatgtgtgtgcattcaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tctctttgtattttcattctgtatgtctgtgtggtgtacgcacatgtgtgtgcattcaca 164

                                                                       
Query: 245 tgcgtgtgcattcacatgtgtgtgtattcacatatgtgtgcacatgtttgtgtgaaggta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tgcgtgtgcattcacatgtgtgtgtattcacatatgtgtgcacatgtttgtgtgaaggta 104

                               
Query: 305 tatcaatgttaatatcatta 324
           ||||||||||||||||||||
Sbjct: 103 tatcaatgttaatatcatta 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no306_i10.g1 MSMg01no306_i10.g1 CHROMAT_FILE:
MSMg01no306_i10.g1 PHD_FILE: MSMg01no306_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:20 2005
         (294 letters)



>mm_chr5_111396020_111396715
          Length = 696

 Score =  545 bits (282), Expect = e-160
 Identities = 292/296 (98%), Gaps = 2/296 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagaccagttgaaggaccagttggaaagggaaaatgaggaaggacttttaagggctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagaccagttgaaggaccagttggaaagggaaaatgaggaaggacttttaagggctggg 260

                                                                       
Query: 61  catagagctcagtgccacctccttgccaatcaggcacagcccctccttaatccccagcac 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 catagagctcagtgccacctccttgccaatcaggcacagcccttccttaatccccagcac 320

                                                                       
Query: 121 tggtaaccag--ccccccccccaaaaaaaagagaaaaataacagaggaagaaaaaaaacc 178
           ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtaaccagctcccccccccccaaaaaaagagaaaaataacagaggaagaaaaaaaacc 380

                                                                       
Query: 179 catttatttcagatataaattccttcttgtttgtctgttgttttgaaatagagctatact 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttatttcagatataaattccttcttgtttgtctgttgttttgaaatagagctatact 440

                                                                   
Query: 239 ctagcctgagcagactcatgacagctctactgtcgcaagtctgtaactgtattttg 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagcctgagcagactcatgacagctctactgtcgcaagtctgtaactgtattttg 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 696
Length adjustment: 9
Effective length of query: 285
Effective length of database: 687
Effective search space:   195795
Effective search space used:   195795
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)