Query= MSMg01no307_c06.b1 MSMg01no307_c06.b1 CHROMAT_FILE:
MSMg01no307_c06.b1 PHD_FILE: MSMg01no307_c06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:07 2005
(652 letters)
>mm_chr5_89675138_89676190
Length = 1053
Score = 1178 bits (609), Expect = 0.0
Identities = 642/653 (98%), Gaps = 2/653 (0%)
Strand = Plus / Minus
Query: 1 ataagaactaagtttcctggatgaaatgagaacatgctcctttgggaatactctttcatt 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 944 ataagaactaggtttcctggatgaaatgagaacatgctcctttgggaatactatttcatt 885
Query: 61 tttcctttttttgtttgttttttgttttttttcaaaaactgatttttctcttttaagca- 119
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 884 tttcctttttttgtttg-tttttggtttttttcaaaaactgatttttctcttttaagcat 826
Query: 120 ttttttataaactttagcctccaattattctttaatttaaaaaattggaatgatgtttag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 ttttttataaactttagcctccaattattctttaatttaaaaaattggaatgatgtttag 766
Query: 180 attcaaagagttccctgtcattattttaaaattttctttgaattttatgtaggtagtgtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 attcaaagagttccctgtcattattttaaaattttctttgaattttatgtaggtagtgtt 706
Query: 240 ttccacatacaaaacaaattacaatttaaaaaattaccttctagtctctgaaatattatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ttccacatacaaaacaaattacaatttaaaaaattaccttctagtctctgaaatattatt 646
Query: 300 tatagtttatgcattttattcacctttctaagtagtgcttaaaggacttcctcaaatatt 359
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 645 tacagtttatgcattttattcacctttctaagtagtgcttaaaggacttcttcaaatatt 586
Query: 360 gtgtagctcttgttatccatatagtttagaatgtgaagcaaagttttgtcagggagcctc 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gtctagctcttgttatccatatagtttagaatgtgaagcaaagttttgtcagggagcctc 526
Query: 420 atgtctgtgggtaagtcttgttgatatttaggctagcatctgatatgcagaaaagcaaaa 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 525 atgtctgtgggtaagtcttgttgatatttaggctagcatctgatatacagaaaagcaaaa 466
Query: 480 cccttctacataagttcttaacttctcccaagcaaactggctcaattatcttagagataa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cccttctacataagttcttaacttctcccaagcaaactggctcaattatcttagagataa 406
Query: 540 gccctcttgagtcatttaccttaggataacaaccttacattaggctgactgagttgcagg 599
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 405 gccctcttgagtcatgtaccttaggataacaaccttacattaggctgactgagttgcaag 346
Query: 600 agtgggtgaggacggtcccatgtgcatagtctctttaacagtcttcctcagcc 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agtgggtgaggacggtcccatgtgcatagtctctttaacagtcttcctcagcc 293
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_c06.g1 MSMg01no307_c06.g1 CHROMAT_FILE:
MSMg01no307_c06.g1 PHD_FILE: MSMg01no307_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:07 2005
(646 letters)
>mm_chr5_89494279_89495321
Length = 1043
Score = 978 bits (506), Expect = 0.0
Identities = 536/548 (97%), Gaps = 5/548 (0%)
Strand = Plus / Plus
Query: 101 tacctgggtgctgggg--tgcgacaggtgcttatgcatggatagcaaagtctttgtccac 158
|||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 299 tacctgggtgctggggattccgacaggtgcttatgcatggacagcaaagtctttgtccac 358
Query: 159 tgagccactgcccttgccctggcactcttaatgtttaaatgtataaagatattctgagac 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgagccactgcccttgccctggcactcttaatgtttaaatgtataaagatattctgagac 418
Query: 219 caataactttggtaactaccactttgttgtatctaacagagtccattatgcataggagta 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 caataactttggtaactaccactttgttgtatctaacagagtccattatgcataggagta 478
Query: 279 gatcaacaaatgtagaatgaatgaattagccaaaccaggtggttaggatatgaacccagt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gatcaacaaatgtagaatgaatgaattagccaaaccaggtggttaggatatgaacccagt 538
Query: 339 gaacccatcctgataatagctaaaaaaacaaaaattgaaagggaaagatactaaactcgt 398
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 539 gaaagcatcgtgataatagctaaaaaaacaaaaattgaaagggaaagatactaaactcat 598
Query: 399 tcatatgatatctaccgtttgtgactttgctctgtgggtcctccaagaatagtagtgagg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 599 tcatatgatatctaccgtttgtgactttgctctgtgggtcctccaagaatagt---gagg 655
Query: 459 tggtcttcttgatcttctccctttgctgagttcatgacaattcattgtcagaactggctg 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tggtcttcttgatcttctccctttgctgagttcatgacaattcattgtcagaactggctg 715
Query: 519 ggttatgcaactgtagaaccctgtgtattctcacacatggaggatgaaagtttatttatg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ggttatgcaactgtagaaccctgtgtattctcacacatggaggatgaaagtttatttatg 775
Query: 579 atgaggaagctaccaggtgaagggttaccatagagtcagtgtgactgtggctttacaggg 638
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 776 atgaggaagctaccaggtgaagggttaccatagagtctgtgtgactgtggctttacaggg 835
Query: 639 gccttgtg 646
||||||||
Sbjct: 836 gccttgtg 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1043
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1033
Effective search space: 656988
Effective search space used: 656988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
