Query= MSMg01no307_f20.b1 MSMg01no307_f20.b1 CHROMAT_FILE:
MSMg01no307_f20.b1 PHD_FILE: MSMg01no307_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:24 2005
(699 letters)
>mm_chr5_92874547_92875643
Length = 1097
Score = 1309 bits (677), Expect = 0.0
Identities = 690/695 (99%), Gaps = 2/695 (0%)
Strand = Plus / Plus
Query: 5 gaattcttaacaagtggtctctggccccttttctctacaacattggaattatttttatta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaacaagtggtctctggccccttttctctacaacattggaattatttttatta 264
Query: 65 catataataaccaagcttcttgagaaacaatgagccaaatcctctatgctttctacatca 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 catataataaccaagcttcttgagaaacaatgagtcaaatcctctatgctttctacatca 324
Query: 125 tctgatcctctccagaaactcatgagggagactctgttatcattccttttacagatgatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgatcctctccagaaactcatgagggagactctgttatcattccttttacagatgatg 384
Query: 185 aaattgaggccattttaagggtcatatagatgtttattggtagaactgggatttgaaccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaattgaggccattttaagggtcatatagatgtttattggtagaactgggatttgaaccc 444
Query: 245 gggcagtccagcacccaagcttaggggattaaggttttctattcttgtttcacactattt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggcagtccagcacccaagcttaggggattaaggttttctattcttgtttcacactattt 504
Query: 305 ttttcaaagatgtgaagttacctcctacgggatgtatccaaacccatcgagagaccctca 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 ttttcaaagatgtgaagttacctcctacgggatgtatccaaacccatcaagagaccctca 564
Query: 365 aacaccaaatggcaccattccattctatcacccaccctgactttctcaatgtataccagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacaccaaatggcaccattccattctatcacccaccctgactttctcaatgtataccagc 624
Query: 425 cctggaaaccactcagtccatctgcaactgtgaaaatcagtgctccccacccccccccaa 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 cctggaaaccactcagtccatctgcaactgtgaaaatcagtgctccccaccccccc--aa 682
Query: 485 gtctatcccaaggagccagctggcagccatgcaatagattattgaggaatccctcagcta 544
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtctatccaaaggagccagctggcagccatgcaatagattattgaggaatccctcagcta 742
Query: 545 gacatatccacaaaagatcaattcctccacccagcacttacctcatccatagacccctgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gacatatccacaaaagatcaattcctccacccagcacttacctcatccatagacccctgt 802
Query: 605 cctcgacacgccagccacgtgaaaaccaagccaaagaacacacccagtgccataatgatg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cctcgacacgccagccacgtgaaaaccaagccaaagaacacacccagtgccataatgatg 862
Query: 665 tagggtatgttggtgacaaccaaagtcgtgttaat 699
|||||||||||||||||||||||||||||||||||
Sbjct: 863 tagggtatgttggtgacaaccaaagtcgtgttaat 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1097
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1087
Effective search space: 748943
Effective search space used: 748943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_f20.g1 MSMg01no307_f20.g1 CHROMAT_FILE:
MSMg01no307_f20.g1 PHD_FILE: MSMg01no307_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:24 2005
(675 letters)
>mm_chr5_92925979_92927051
Length = 1073
Score = 611 bits (316), Expect = e-179
Identities = 354/382 (92%), Gaps = 26/382 (6%)
Strand = Plus / Minus
Query: 295 gctgggcccaggcagtttggaaacaaacaacaaagagaccctgtctcaaactagatagaa 354
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 gctgggcccgggcagtttggaaacaaacaacaaagagaccctgtctcaaactagatagaa 1014
Query: 355 ggcaaggactgtcgcctgaggcatgtattagcccatactcatgtatacacacacacac-- 412
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 ggcaaggactgtcacctgaggcatgtattagcccatactcatgtatacacacacacacat 954
Query: 413 acacattttttatatatatatatatatatatatatatatatataaacatattaattatat 472
|||||||| ||||||||||||||||||||||||||||||
Sbjct: 953 acacattt----------------------tatatatatatataaacatattaattatat 916
Query: 473 cttatactatttacatatatacactatatatgtatatgatataattaatatgttaatcta 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 cttatactatttacatatatacactatatatgtatatgatataattaatatgttaatcta 856
Query: 533 ttaaataatatatatgtattgtgtgtatatatattcacatgcaagaaataaataacattt 592
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ttaaata--atatatgtattgtgtgtatatatattcacatgcaagaaataaataacattt 798
Query: 593 taacaatttgagagaatacaccaacacatccgtacttaagcagagcaaggacatcttcat 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 taacaatttgagagaatacaccaacacatccgtacttaagcagagcaaggacatcttcat 738
Query: 653 aggtcaggtaaactttactttg 674
||||||||||||||||||||||
Sbjct: 737 aggtcaggtaaactttactttg 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1073
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1063
Effective search space: 706895
Effective search space used: 706895
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
