Query= MSMg01no307_i04.b1 MSMg01no307_i04.b1 CHROMAT_FILE:
MSMg01no307_i04.b1 PHD_FILE: MSMg01no307_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:35 2005
(485 letters)
>mm_chr5_144579588_144580472
Length = 885
Score = 861 bits (445), Expect = 0.0
Identities = 475/485 (97%)
Strand = Plus / Minus
Query: 1 tcttcaaagcattcagaccacctgtaagacatcacctaactcttggccttacacccatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcttcaaagcattcagaccacctgtaagacatcacctaactcttggccttacacccatta 626
Query: 61 aaagtgatactgaacgttccacagacctttctatgtttaaaggaaaagaatcagctgtgt 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 625 aaagtgatactgaacgttccacagacctttctatgtttaaaggcaaagaatcagctgtgg 566
Query: 121 gtgaatactcgtcatctctttagaagaggcatcaccatggaagcagagcagtattaacag 180
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 565 gtgaatactcgtcatctctttagaagaggcatcaccacggaagcagagccgtattaacag 506
Query: 181 gaagagggcagaagttcgaaagtttgtcctcgctcactcccttccggaataatctttggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaagagggcagaagttcgaaagtttgtcctcgctcactcccttccggaataatctttggt 446
Query: 241 ttgcagacactcttatcacggcgtcacagaagagatggacctgcatgtttacccctgctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 445 gtgcagacactcttatcacggcgtcacagaagagatggacctgcatgtttacagctgggc 386
Query: 301 cctctcctaggacacacacttgctcggctcacgggctacagtaacatgccacttgccgtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctctcctaggacacacacttgctcggctcacgggctacagtaacatgccacttgccgtg 326
Query: 361 tggggaaaatctgcatattcatttaaaagttatcttacaaccagcctctatacagcctac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggggaaaatctgcatattcatttaaaagttatcttacaaccagcctctatacagcctac 266
Query: 421 tgagtcaccacgatgaacaacttttatttctcattgtggtcaattattacaggcaggact 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 265 tgagtcaccacgatgaacaacttttatttctcattgtggtcaattattacaggcaggatt 206
Query: 481 taaaa 485
|||||
Sbjct: 205 taaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_i04.g1 MSMg01no307_i04.g1 CHROMAT_FILE:
MSMg01no307_i04.g1 PHD_FILE: MSMg01no307_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:35 2005
(578 letters)
>mm_chr5_144405331_144406308
Length = 978
Score = 1073 bits (555), Expect = 0.0
Identities = 573/579 (98%), Gaps = 1/579 (0%)
Strand = Plus / Plus
Query: 1 aatgagaagataaaacagaacagaagacagctggttcctcgggagctgtcctaataaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aatgagaagataaaacagaacagaagacagctggttcctcgggagctgttctaataaaat 260
Query: 61 gagtctgggaactagaggagctggcaaggtgagggtggggacccagacttgctgttactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtctgggaactagaggagctggcaaggtgagggtggggacccagacttgctgttactt 320
Query: 121 ttaacattgataattacagaaatgtattagtactgtgatttaaaaagacaatatgaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaacattgataattacagaaatgtattagtactgtgatttaaaaagacaatatgaaggt 380
Query: 181 aagctaactactagaagatttaaaataagataaaggcatctcacataagaggaggaaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctaactactagaagatttaaaataagataaaggcatctcacataagaggaggaaaac 440
Query: 241 aaaacagattatgggatcaggccctccagtcaaacgtgctgtggtctgtttttcccttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacagattatgggatcaggccctccagtcaaacgtgctgtggtctgtttttcccttcc 500
Query: 301 tttgttcagaatataactaaatactttgttatagtgtagagattccccgcgctcacacac 360
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 501 tttgttcagaatataactaaatactttgttatagtgtagagattccatgtgctcacacac 560
Query: 361 gttgtgaattcatgtcttccagcctccgatgccctccctgctgctttcctcctttctgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgtgaattcatgtcttccagcctccgatgccctccctgctgctttcctcctttctgag 620
Query: 421 acagggtcttgctgaccctggggctcattggctagactgattggctagctagtattggaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 acagggtcttgctgaccctggggctcattggctagactgattggctagctagtactggaa 680
Query: 481 tgctcctgttttgcccccc-gccccacccctgtactggggtaacggagactcatggctgc 539
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctcctgttttgcccccccgccccacccctgtactggggtaacggagactcatggctgc 740
Query: 540 tgggtgctggagagctgaacttgggtcatgcttgtggtg 578
|||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgggtgctggagagctgaacttgggtcatgcttgtggtg 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
