Query= MSMg01no307_i19.b1 MSMg01no307_i19.b1 CHROMAT_FILE:
MSMg01no307_i19.b1 PHD_FILE: MSMg01no307_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:38 2005
(665 letters)
>mm_chr5_143561865_143562929
Length = 1065
Score = 930 bits (481), Expect = 0.0
Identities = 550/585 (94%), Gaps = 24/585 (4%)
Strand = Plus / Minus
Query: 93 aagttacagacggttgggagctgccacgtgggtgctgggagttgaaggacgat-ggtctt 151
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1065 aagttacagacggttgggagctgccacgtgggtgctgggagttgaaggacgatgggtctt 1006
Query: 152 aaccatctctccagtcccagtagaaggaattcttaactctgaagttgtgctgtggcttta 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1005 aaccatctctccagtcccagtagaaggaattcttaactctgaagttgtgctgtggcttta 946
Query: 212 ggtgtcaaggcgtcagctccagtatc--------gt-t--ttttttttttgtttgtttgt 260
|||||| ||||||||||||||||||| || | |||||| |||||||||||||
Sbjct: 945 ggtgtccaggcgtcagctccagtatccagctccagtatcgttttttgtttgtttgtttgt 886
Query: 261 ttgtttttggttttttttttttgtttgtttttggctggcttacctctctttctgaacatt 320
||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 ttg--tttg----------tttgtttgtttttggctggcttacctctctttctgaacatt 838
Query: 321 ttccttcgtcctttgtccctggaagtccatccatccctaactccaccacccccgccccgc 380
|||||| ||||||||||| |||||||||||||||||||||||||||||| | | | ||
Sbjct: 837 ttcctttgtcctttgtccgtggaagtccatccatccctaactccaccactcttgtgctgc 778
Query: 381 agtggtccttaggggataaattccttccagagggaagtccccctgtaattgcctcctgat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 agtggtccttaggggataaattccttccagagggaagtccccctgtaattgcctcctgat 718
Query: 441 tgtgacctatctggagccccaagggcaggacccaggctgagtgggcttatttgcatatca 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tgtgacctatctggagccccaagggcaggacccaggctgagtgggcttatttgcatatca 658
Query: 501 ctggctaagctggtctttactggcctgggagcccttggtatcctttttaatttaaatttt 560
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctggctaagctggtctttactggtctgggagcccttggtatcctttttaatttaaatttt 598
Query: 561 aaggatgtacttttgaggataaggcgtctgctgggggtaagtcaaagcccgcgggccggt 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaggatgtacttttgaggataaggcgtctgctgggggtaagtcaaagcccgcgggccggt 538
Query: 621 tctgtgaagatggaggggcttggatttggtcaggcggtgtcctgc 665
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tctgtgaagatggaggggcttggatttggtcaggcggtgtcctgc 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_i19.g1 MSMg01no307_i19.g1 CHROMAT_FILE:
MSMg01no307_i19.g1 PHD_FILE: MSMg01no307_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:38 2005
(290 letters)
>mm_chr5_143527008_143527697
Length = 690
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%)
Strand = Plus / Plus
Query: 1 actaagtagcatcgcctggcctggaactctcatatcctcctgtcttacccttgcacttgc 60
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 actaagtagcatcacctggcctggaactctcatatcctcctgtcttagccttgcacttgc 260
Query: 61 tgttgcctaatgccaatcttgccgagtggcacccacacttaagatgacacgactaaacac 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgcctaatgccaaccttgccgagtggcacccacacttaagatgacacgactaaacac 320
Query: 121 tacccagaagtaatggtctaatgagataaataacaagtgcgttatttacacacacaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacccagaagtaatggtctaatgagataaataacaagtgcgttatttacacacacaggtt 380
Query: 181 cgaagtctgtccttcgagctacctgagaccacaaaggcagaaaagggtagtcccaggcct 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgaagtctgtccttcaagctacctgagaccacaaaggcagaaaagggtagtcccaggcct 440
Query: 241 catttccattatgctttcatgctgatccatcacacagtacccacaggaca 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttccattatgctttcatgctgatccatcacacagtacccacaggaca 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
