BAC Information

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BAC

Clone NameMSMg01-307K20
Chromosome5 (Build37)
Map Location 15,380,084 - 15,380,755
singlet/doubletsinglet
Overlap gene4930519H02Rik
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Downstream geneLOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307K20.T7 (MSMg01no307_k20.b1)MSMg01-307K20.TJ (MSMg01no307_k20.g1)
ACCAG431968AG431969
length751745
length of high quality
(start - end)		683 (69 - 751)673 (73 - 745)
definitionCHROMAT_FILE: MSMg01no307_k20.b1 PHD_FILE: MSMg01no307_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:47 2005CHROMAT_FILE: MSMg01no307_k20.g1 PHD_FILE: MSMg01no307_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCCCTTCATCACATACTAACGGGAAAACACCAATACAAGGACGGAA
GCTATGTCCTAGAAAAAGCTAGAACCAACTCCTTCAACAAACCTAAAAGA
AGACAGCCACAAGAACAGAATCCAAACTCTAACAACAAAAATAACAGGAA
GCAACAATTACTTTTCCTTAATACCTCTTAATATAAATGAACTCAATTCC
CCAATAAAAAAACATAGACTAACAAACTGGCTACACAAACAGGACCCAAC
ATTGTGCTGCTTACAAGAAACCCAACTCAGGGAAAAAGATAGACAATACC
TCAGAGTGAAAGGCTGGAAAACAATTTTCCAAGCAAATGGTCTGAAGAAA
ATTGCTGGAGTAGCCATTCCAACATTGAATGAAATCAACTTCCAACCCAA
AGTTTTCAAAAAGACAAGAAGGGACACTTCATACTCATCATAGGTAAAAT
CTTCCAAGATAAACTCTCAATTCTGAATATTTATGCTCCAAATGCAAGGG
TAACCACATTCATTAAAAAAAAAAACTTTAGTAAGGTTCAAAGCATACAT
TGCACCTCACACAATAATAGTGGGAGAACTCCAAACCCCACTCTCATCAA
TGGACAGATCCTGGAAACAAAAACTAAACAGAGACACAGTGAAACTAACA
GAAGTTATGAAACAAATGGATTTAACAGATATTTACAGAAAATTTTATCC
T

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGGGTGTACTCTCATACTAAGCTGCTCT
GTGTGCGGAGGTTTGGAGCAGACCTGGGGAGTGCCTATTGCTCCATAATA
CACAACATTTCCATGTTCAAATCTGAATTCCCCCCTCTTCCTCTTTTTGT
CAGGATTGTATAATGAACTTCCACAGCTTGAGCTACCTGTTGGCATCCTT
AGTTCACTTTTGTCTTCCATAAAGTTGGGGAAGCATTTAGTCTTCCTGCT
GATACCTTGCGTTTCAGTCCTGCTTATGAAGGCAGTGTCAGTCATTTCTA
ATAATCCTCTTGGTTTTATTTTCTGGCATTGGTGGGTTTGAGCTCACGAC
CTTCATCTAAACTGTTCACCAACCATGGCTAATGTACTGCCTCAGCTTTT
TTGAAACCATAACCAAATATTTGACTGAAATGGTTTACGAACATTAATAA
TAAAATTCTAATAAGCATTATTAGAGGATCCCAATATCATTATCCTTTCT
GAACCTCACAGTAGACTGCAGTCCATTCAGTTTTTGCGGTCCTCAGATCT
AATGCATTTAAAACACAGAGATGGCACTTCTAAAAGCATGGTTCCAAATG
TATTACAATGTTTATAAAATAGTTATCTGGCTATCATGGACTACTTTGTG
ATTATTTATTGTGGGGAGACAAAGCAAAAATTAGAAGGCTTAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_k20.g1 MSMg01no307_k20.g1 CHROMAT_FILE:
MSMg01no307_k20.g1 PHD_FILE: MSMg01no307_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:47 2005
         (673 letters)



>mm_chr5_15379884_15380956
          Length = 1073

 Score = 1214 bits (628), Expect = 0.0
 Identities = 661/672 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggtgtactctcatactaagctgctctgtgtgcggaggtttggagcagacctggggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||
Sbjct: 201 tgggtgtactctcatactaagctgctctgtgtgcggaggtttggagcagaggtgtggagt 260

                                                                       
Query: 61  gcctattgctccataatacacaacatttccatgttcaaatctgaattcccccctcttcct 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctattgctccataatacacgacatttccatgttcaaatctgaattcccccctcttcct 320

                                                                       
Query: 121 ctttttgtcaggattgtataatgaacttccacagcttgagctacctgttggcatccttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttttgtcaggattgtataatgaacttccacagcttgagctacctgttggcatccttag 380

                                                                       
Query: 181 ttcacttttgtcttccataaagttggggaagcatttagtcttcctgctgataccttgcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcacttttgtcttccataaagttggggaagcatttagtcttcctgctgataccttgcgt 440

                                                                       
Query: 241 ttcagtcctgcttatgaaggcagtgtcagtcatttctaataatcctcttggttttatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcagtcctgcttatgaaggcagtgtcagtcatttctaataatcctcttggttttatttt 500

                                                                       
Query: 301 ctggcattggtgggtttgagctcacgaccttcatctaaactgttcaccaaccatggctaa 360
           |||||||||||||||||||||||||||||||||||||  ||||| |  || |||||||||
Sbjct: 501 ctggcattggtgggtttgagctcacgaccttcatctacgctgttgattaagcatggctaa 560

                                                                       
Query: 361 tgtactgcctcagcttttttgaaaccataaccaaatatttgactgaaatggtttacgaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtactgcctcagcttttttgaaaccataaccaaatatttgactgaaatggtttacgaac 620

                                                                       
Query: 421 attaataataaaattctaataagcattattagaggatcccaatatcattatcctttctga 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 attaataataaaattctaataagcattattagacgatcccaatatcattatcctttctga 680

                                                                       
Query: 481 acctcacagtagactgcagtccattcagtttttgcggtcctcagatctaatgcatttaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acctcacagtagactgcagtccattcagtttttgcggtcctcagatctaatgcatttaaa 740

                                                                       
Query: 541 acacagagatggcacttctaaaagcatggttccaaatgtattacaatgtttataaaatag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acacagagatggcacttctaaaagcatggttccaaatgtattacaatgtttataaaatag 800

                                                                       
Query: 601 ttatctggctatcatggactactttgtgattatttattgtggggagacaaagcaaaaatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttatctggctatcatggactactttgtgattatttattgtggggagacaaagcaaaaatt 860

                       
Query: 661 agaaggcttagt 672
           ||||||||||||
Sbjct: 861 agaaggcttagt 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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