Query= MSMg01no309_l17.b1 MSMg01no309_l17.b1 CHROMAT_FILE:
MSMg01no309_l17.b1 PHD_FILE: MSMg01no309_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:23 2005
(320 letters)
>mm_chr5_44559903_44560622
Length = 720
Score = 547 bits (283), Expect = e-160
Identities = 307/315 (97%)
Strand = Plus / Minus
Query: 4 ggaattccttctacaagtaagttctgacttacaaggtagtagctgcctacataccttaca 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 518 ggaattccttctacaagtaagttctgacttacaaggtggtagctgcctacataccttaca 459
Query: 64 caagcagcaagggtctgggtatgcccagagcccacactctcagcagccctgggatgcatg 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 458 caagcagcaagggtctgggtatgccccgagcccacactctcagcagccctgggatgcatg 399
Query: 124 attggcctactaactcttgctagctttgaaacaggagacctggcttcagcagtatgttta 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 398 attggcctactaactcttgctagctttgaaacaggagacctggctttagcagtatgttta 339
Query: 184 aatattttaatagatgtcctatgtgtagtagatgcttttcgtttctttcatatcacttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aatattttaatagatgtcctatgtgtagtagatgcttttcgtttctttcatatcacttaa 279
Query: 244 tactgtcataaagtgacactttttaaagtatccttaattagatttgtttttattattttt 303
||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct: 278 tactgtcataaagtgacacttttaaaagtagccttaaaaagatttgtttttattattttt 219
Query: 304 tgtgtgtatgagtgt 318
||||| |||||||||
Sbjct: 218 tgtgtatatgagtgt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_l17.g1 MSMg01no309_l17.g1 CHROMAT_FILE:
MSMg01no309_l17.g1 PHD_FILE: MSMg01no309_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:23 2005
(207 letters)
>mm_chr5_44391217_44391822
Length = 606
Score = 348 bits (180), Expect = e-100
Identities = 201/212 (94%), Gaps = 9/212 (4%)
Strand = Plus / Plus
Query: 1 actgggcaggtaatactcaaagttatctggcaaatccagacccacaggaagtcccttaac 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 actgggcaggtaatactcaaagttatctggcaaatccagacccataggaagtcccttaac 260
Query: 61 tccacagaccataaaaacacaaggattttaaaggaagaatttgagttcttttttctggtt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccgcagaccataaaaacacaaggattttaaaggaagaatttgagttcttttttctggtt 320
Query: 121 gattacagttaatttgctggagagaaggcaaaaaggaaggggaggagggagacagggcag 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 gattacagttaatttgctggagaga-ggcaaaaaggaaggggaggagggagacagggcag 379
Query: 181 gagggag----ggag----ggagggagggagg 204
||||||| |||| |||||||||||||
Sbjct: 380 gagggagacagggagacagggagggagggagg 411
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 606
Length adjustment: 9
Effective length of query: 198
Effective length of database: 597
Effective search space: 118206
Effective search space used: 118206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
