Query= MSMg01no311_i01.b1 MSMg01no311_i01.b1 CHROMAT_FILE:
MSMg01no311_i01.b1 PHD_FILE: MSMg01no311_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:22 2005
(249 letters)
>mm_chr5_76207101_76207749
Length = 649
Score = 429 bits (222), Expect = e-125
Identities = 240/246 (97%), Gaps = 3/246 (1%)
Strand = Plus / Minus
Query: 5 acatggctatggacaagctacttagtctgggttcttaataagtgtgaaatgggaagaaaa 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 408 acatggctatggacaagctacttagtctgggttcttaataagtgtgaaatcggaagaaaa 349
Query: 65 agcaagaggaagaggaggaggagaagaactctaccttgtacagttaactacagattggta 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 348 agcaagaggaagaggaggaggagaagaagtctaccttgtacagttaactacagattggta 289
Query: 125 agataatgcacgtgtcactgacactcagaatgaaggtcatatatatagataaccaagaag 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 agataatgcacatgtcactgacactcagaatgaaggtcatatatatagataaccaagaag 229
Query: 185 ttaaatatcatgcactccccagaccagtggttctcaacc-tctctaataccgagaccttt 243
|||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||
Sbjct: 228 ttaaatatcatgcactccccagaccagt-gttctcaaccttc-ctaataccgagaccttt 171
Query: 244 taatac 249
||||||
Sbjct: 170 taatac 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no311_i01.g1 MSMg01no311_i01.g1 CHROMAT_FILE:
MSMg01no311_i01.g1 PHD_FILE: MSMg01no311_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:22 2005
(515 letters)
>mm_chr5_76044525_76045439
Length = 915
Score = 903 bits (467), Expect = 0.0
Identities = 504/519 (97%), Gaps = 5/519 (0%)
Strand = Plus / Plus
Query: 1 ctgttctaatttctaagcttgaaagcgcaaacctgtctaaatgattctccatgaatattc 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ctgttctaatttctaagcttgaaagcgcaaacctgtctaaatgagcctccatgaatattc 260
Query: 61 ttttatatgcagtgagttcgtttaaaagctttaagatgtaggatgcgcttctagaaaata 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttatatgcagtgagttcatttaaaagctttaagatgtaggatgcgcttctagaaaata 320
Query: 121 gaaggatagtggttttatcagaaaatgggggagccaggagtgtgactccctcactgttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggatagtggttttatcagaaaatgggggagccaggagtgtgactccctcactgttac 380
Query: 181 tgtgcctggcaaggcatatgactgtgtatgtgagacccacgtactgtgtatgtgtatgtg 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgcctggtaaggcatatgactgtgtatgtgagacccacgtactgtgtatgtgtatgtg 440
Query: 241 actcacggaggatcaggacatgagaaggggtcagagagagcatggagcagctagggaaag 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcacagaggatcaggacatgagaaggggtcagagagagcatggagcagctagggaaag 500
Query: 301 aatagagacgggaagagagggatggcacgggatgaaagtgttccgcccaggaaggtgtgg 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gatagagacgggaagagagggatggcacgggatgaaagtgttccggggaggaaggtgtgg 560
Query: 361 ccaagagtgaggtcacagtggctcttctagtgacattcccaggtaactaccaagctaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaagagtgaggtcacagtggctcttctagtgacattcccaggtaactaccaagctaaaa 620
Query: 421 gacaggctgaaatgaaagaccctcttccttgtgtccttgggagaagacttcaagttgaag 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 gacaggctgaaatgaaagaccctcttccttgtgtccttgggagaagacgtcaagttgaag 680
Query: 481 ctgtgaaactttttttttttttttt-----ggagaaaac 514
||||||||||||||||||||||||| |||||||||
Sbjct: 681 ctgtgaaactttttttttttttttttttttggagaaaac 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
