BAC Information

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BAC

Clone NameMSMg01-311K20
Chromosome5 (Build37)
Map Location 15,195,967 - 15,196,254
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311K20.T7 (MSMg01no311_k20.b1)MSMg01-311K20.TJ (MSMg01no311_k20.g1)
ACCAG434111AG434112
length730735
length of high quality
(start - end)		675 (45 - 719)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no311_k20.b1 PHD_FILE: MSMg01no311_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:35 2005CHROMAT_FILE: MSMg01no311_k20.g1 PHD_FILE: MSMg01no311_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:35 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATTTATTCCCTGACGGCAAATCCTACCTATGTCTCCATGAGAT
GAGGCTTTGTCTCACATTAAGAACTGCAGAATGCAATACATCAAAACCTT
GCTGATCTCCATGGTGCTGATGCACACCACAGCCTCATGGTGAACATCTA
CACTGGCAGTTTTCAGGGTATGTTGAAGTAGTCCACCATGTCACTGTAAC
CTGCAAAGTGCCATGAGACAATACTAATAGAAATCTGCAGGATTCCTCCA
CATTAGATTTCACTATGGTCTTCAACGTCATTTTGTAAAGAAATACTATG
GGTTCACAGATACACACACACACACAAACATGAAGACCAGAGGACTTTAT
GGGAGGATTGTTCTCTCTACCACGCGCATTCTAAGGAAAAAATTCTGGTT
TCTAGGCTTGACAGCAATGATGAATACCTGCTCAACCATGTCATTAACTC
ATCAACTGATCATCTAAACCAAGGAATTTCATAAGCTCTATATTTGTATT
TAAGTTCCCTTTCTCTCTCTGTCTCTCTGTTTCTCGGTCTGTCTCTCTCT
TTCTGTCTCTCTGTCTCTGTCTCTGTTTCTCTCTCTCTCTGTTTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGCGTCCCCC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCTGCTCATCACAAGCCGTCACTA
ACAGAGTGTGGGTGGTGAGAACTAGTGCTTATTTGTTGATGAAGAAGTAA
GAACATACATACATCAGGGACCACATTTTGAATGTGTTTTGTGGTACAGC
CTAGGTTTTGGGTGTTTATGAACAGTACACTTGAGAAAACCTTGAAATTG
ACAGCTTTATGTGCTCTACATTAAAATATAACTTTTACATTTGCTACATT
TACATGACGATGAATAAACCCCAATGATTGCTTACTGCGTTATAACACTG
ATGTTAGTGTTATTCCATGNGTCTGCCCCCCCCCCCACAGAGATGGTCGT
AACTTAGCAACTTATCTTCACCCACCTTTATAAACAAAAAAGACGGCGGG
CGGTGATAGTATTATATTAGGACTGTCATGCTTTTAAATGTTAAAAAATG
CTTGTATGTATAAAATATAAAATTGCAAAAGAGCAGTAACTCATTGACAT
TGTTATAGATTAAACTTTATTCATTTAAAAAGTAAACTTTAATTTTGTTA
AGGAATTTAAACAAGAACCCAATAAAAATGAATAATATACTATCTTTTTA
TACAAAACTTGTAATTTAAAGCATGTTATTTTGTAAATTTTACTAAGCTC
AGATCAATATTTTAAGAAATATTAGTTAATCTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_k20.g1 MSMg01no311_k20.g1 CHROMAT_FILE:
MSMg01no311_k20.g1 PHD_FILE: MSMg01no311_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:35 2005
         (290 letters)



>mm_chr5_15195767_15196456
          Length = 690

 Score =  487 bits (252), Expect = e-142
 Identities = 279/288 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgctcatcacaagccgtcactaacagagtgtgggtggtgagaactagtgcttattt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgcttattt 429

                                                                       
Query: 61  gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 369

                                                                       
Query: 121 tacagcctaggttttgggtgtttatgaacagtacacttgagaaaaccttgaaattgacag 180
           ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||
Sbjct: 368 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgacag 309

                                                                       
Query: 181 ctttatgtgctctacattaaaatataacttttacatttgctacatttacatgacgatgaa 240
           |||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 308 ctttatatgctctacattaaaatataacttttatatttgttacatttacatgacgatgaa 249

                                                           
Query: 241 taaaccccaatgattgcttactgcgttataacactgatgttagtgtta 288
           ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 248 taaaccccaatgattgcttactgcgttataatactgttgttagtgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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