BAC Information

Click to search

BAC

Clone NameMSMg01-311P08
Chromosome5 (Build37)
Map Location 149,055,781 - 149,056,067
singlet/doubletsinglet
Overlap geneC130038G02Rik
Upstream genePdx1, Cdx2, EG231903, LOC622952, Flt3, Map1lc3-ps3, LOC384254, LOC100039805, Pan3, Flt1, LOC100039825, Pomp, Slc46a3, LOC100041819
Downstream geneSlc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311P08.T7 (MSMg01no311_p08.b1)MSMg01-311P08.TJ (MSMg01no311_p08.g1)
ACCAG434309AG434310
length943739
length of high quality
(start - end)
38 (106 - 143)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no311_p08.b1 PHD_FILE: MSMg01no311_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:56 2005CHROMAT_FILE: MSMg01no311_p08.g1 PHD_FILE: MSMg01no311_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTTTTTTTTTCTNNTTTCTTTCTCCCCCCCCCCCTCCCTTNNNNNTTT
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GTAATTCTACATCTGGATCAATAGGCTGCAGAGAGAGGGGGAGGGAGGGA
AGGATTGATTGACTTTCCCTTTTTTTCCATCTTATCCTTTTTTTTCTTTT
TCTCCTTCTTCTCTTCCCTTCCTTTTTTTTTTCCTTTTTTCTCTTCTCTC
CTTTTTCCTTCTCCTTCCTCCCTTCTCTTTTCTCTTTTTTCTTTCCCTTT
TTTTCCCCCCCTCTTTTTTTCCTTCTTTCTCTTCCTTTCCTCCCTCCTTT
TCCTTTCGTCTTCTCCCCTCCATCCTCCGGACCTTTTTTTTTTTTTTCCC
CTTCCTCCCTCTCTTCCCCCCCCCCTATGAGATTTTACCTGGATTTTCCC
CCCCCCCCCCCCCCTTTTTTTTTTGTTTTTTTGTTTTTTTCCTTTTTTNC
CCCCCCCTTCTTTCAAAAAAAAATATTAACTTTCTTTTTGTGGGGGCCGT
GCCTGTCTCCTCCTCCTTTTCTCCCCCTTTCCTTTTCTTCCTCTTCCTTC
TCCCTTTTTTTTTTCTTCTTCTTTCCTCCCTCTTTTTTCCTTTCGTTTCT
TCCTTCTTTCCTTTCTCTTCCTCCTTTTCCTTTTTCCCCTCTTTACTTCT
CACCCTTTTTCTTCTTCTTCCTTTTCCTTTTTTCCCCTTCCTCCTCTTCT
TCTTTTCTTTCCTTTTTCTCCTATCTCCCTTTCCTTTTCTCTTTTCCTCC
CTTCTCTTTTCCTTTTATTCCTTTTTTTTGCCTGCTCTCTTCCCTTTTTC
TTTTTTTCCCCTTTCCTATATTTTTTCTCTTTCTTTTTCCCCCCCTTCTT
CTTCTCTCTTATCTTTTTTCATTTTTTTCTTCCTTCTTTTCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTACATCTTGATCCTTCAGAAGGAG
ACTCTCTTCTGCAGGCCAATAGGAGGAGGCTCTTTGCTGCACTGGATGGA
GCTTGAGCATAGGACCTCAAAGCCCACCCCCACGGTGACACTTGCAGACT
ATCAGACCCTGGGACTGAGGCAAGTGACTGTGATTTGGAGAGAATAGTGA
ACATCCTGATGATAGTCAGAACTAAAGTACCTATGACTTTGCAGAGTGTC
AGACTCCTACATAGACACCAGTAGTCTGACTTGGTATAGCATTTTGGCTT
GCAGAATGCTAAATTAGATTGNGTTCCCCCGCCCCCGCAAGAGATGCTTG
GGTATGGGGAGATGGCCCGCCCCCCCACAAATAAAAAAATCTTGCGCGGA
GCTTGAGCTCAGTTCCCAGCACCTACATCAGGTGGCTCACAACTCTGTCA
GTTCTAGGGAATCTAGCACCCTCTTCTGGCCTCCATGGGCACTGCACTCA
CATGCACAAACCCATTCACAGACACACCTACAGGCTCAGGATTTAAAATA
CTTTTCGATCTTTAAAAAAAGATAGAGAAAGCAGCCTAGGGAGAACTCCC
TTCTATCCCCGACGATAATAGGAATTTGCGGTATCTGAAAAAAATGTGTT
ATATGTTTTGACCACGGATTCAGTTATCTGTCCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_p08.g1 MSMg01no311_p08.g1 CHROMAT_FILE:
MSMg01no311_p08.g1 PHD_FILE: MSMg01no311_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:56 2005
         (287 letters)



>mm_chr5_149055581_149056267
          Length = 687

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatcttgatccttcagaaggagactctcttctgcaggccaataggaggaggctctttg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacatcttaatccttcagaaggagactctcttctgcaggccaataggaggaggctctttg 260

                                                                       
Query: 61  ctgcactggatggagcttgagcataggacctcaaagcccacccccacggtgacacttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcactggatggagcttgagcataggacctcaaagcccacccccacggtgacacttgca 320

                                                                       
Query: 121 gactatcagaccctgggactgaggcaagtgactgtgatttggagagaatagtgaacatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactatcagaccctgggactgaggcaagtgactgtgatttggagagaatagtgaacatcc 380

                                                                       
Query: 181 tgatgatagtcagaactaaagtacctatgactttgcagagtgtcagactcctacatagac 240
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 381 tgatgatagtcagaactaaagtacctatgactttgcagagtgccagactcctgcatagac 440

                                                          
Query: 241 accagtagtctgacttggtatagcattttggcttgcagaatgctaaa 287
           ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accagcagtctgacttggtatagcattttggcttgcagaatgctaaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)