BAC Information

Click to search

BAC

Clone NameMSMg01-311P20
Chromosome5 (Build37)
Map Location 23,023,817 - 23,024,091
singlet/doubletsinglet
Overlap geneSrpk2
Upstream geneOrc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254
Downstream genePus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2, LOC434047, LOC100042244, Kcnh2, Nos3, Atg9b, Abcb8, Accn3, Cdk5, Slc4a2, Fastk, Tmub1, Centg3, Gbx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311P20.T7 (MSMg01no311_p20.b1)MSMg01-311P20.TJ (MSMg01no311_p20.g1)
ACCAG434333AG434334
length764723
length of high quality
(start - end)
280 (46 - 325)294 (77 - 370)
definitionCHROMAT_FILE: MSMg01no311_p20.b1 PHD_FILE: MSMg01no311_p20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:58 2005CHROMAT_FILE: MSMg01no311_p20.g1 PHD_FILE: MSMg01no311_p20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCGGTATGTATGTCTTGTGAGACATGGTCTCTTCAGGCCCTGTG
CAGACCATTGTCCCAAGAGTGAGATCCATCTGAGGAGTTACCTTTAGTCT
CTGGAAACGTGTGGGTGTTTTAGGCTCCTTGTCACACCATGGGGTAAAAT
CAGATGCCTTCTCCCAGGAGAGGGTGGCAGCACTTGTCACTTAGCAGCAC
TGTCATGTGGCCGTTACATGTGCAGGCTCTCTGTTCTCCTTCCTACTTAG
AAGGGATTTCTCCATCTGCCCATGTTCTGTTGCCTCCATCCAGCGCAGTC
ACAGGGTGCTGTTTTCNATAAGTTCCCCCCCCCCCCCTGCTGATATTTTT
TTGGGGATTTATGTTTCCTCGNCCACCCAAAAAAAAAAAAAAACGGGGCC
GGGGGGGGCCTTTCCTTTCCTTCCCTTTTCTTATCCTTTTCTTTCTCTTT
ACCATTTCTCCATCTTTCTCCTTTCCTCTCCCTGTCCCCTTTCTTTTTCC
TCCTTCTTCCCCCATTTTTACTCCTCACTTTCCTTTCCTATCCCCCTCCT
TCTTTTTTTTCATATTTTTCCCCTCTCTCTTATTCTCTTTCCTCCCCTTT
TTTTTCTTCCCTTTCCATCCTCTCTCCTCCCCTCCCATCCTTCCGCTTCC
CTTTTTTTGACTATTGTTTCACCCGTTCCTCCTTTTTTTCCTAACCTTAT
TTTTGCTTTTTTCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTTGCTCTGTACCCTATAT
TTAAATATGGTTATTTAGTCCTCTTGAGTCCAACTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCATATCAAATTTAGGATTGAGAGGCAGGTGG
ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC
TAGGGCTATACAGAGAAACCCTGTCTCGAAACAAAAACAAAAACAAAAAC
AAAAAAACAAATTTAGGATTGGTAAAAATTCTTTCCCAATCTGTTGGTGG
CCTTTTTGTCTTATTGTTAGTCNTCTTTGCCTTACACAAGCTTTGCAATT
TTAGGAGGTCCCATTTGTCAACCCCCCCCCCAATTAAACATTTTTATTAA
GATTTATGTATATGAATACACTGTAGGTGTCTTCAGATACATCAGAAAAG
GGCATCAGATACCATTACAGATGGTTGTGAGCCACCATGTAGATGCTGGG
AATTGAACTCAGGACCTCTGGAAGAGCAGTCAATACTCTTAACCACTGAG
CCATCTATTCAGTCCCCCATTTGCCGATTCTTGACCCTATAGAACCAGCC
ATTGCTGTTCTGTCCAGGAATTTTTCCCCGTGCCCCATATCTTCAAGGCC
CTTCCCCCCTTTTCTCCTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_p20.b1 MSMg01no311_p20.b1 CHROMAT_FILE:
MSMg01no311_p20.b1 PHD_FILE: MSMg01no311_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:58 2005
         (280 letters)



>mm_chr5_23023613_23024292
          Length = 680

 Score =  532 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccggtatgtatgtcttgtgagacatggtctcttcaggccctgtgcagaccatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gaattctccggtatgtatgtcttgtgagacatggtctcttcaggccctgtgcagaccatt 420

                                                                       
Query: 65  gtcccaagagtgagatccatctgaggagttacctttagtctctggaaacgtgtgggtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtcccaagagtgagatccatctgaggagttacctttagtctctggaaacgtgtgggtgtt 360

                                                                       
Query: 125 ttaggctccttgtcacaccatggggtaaaatcagatgccttctcccaggagagggtggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttaggctccttgtcacaccatggggtaaaatcagatgccttctcccaggagagggtggca 300

                                                                       
Query: 185 gcacttgtcacttagcagcactgtcatgtggccgttacatgtgcaggctctctgttctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gcacttgtcacttagcagcactgtcatgtggccgttacatgtgcaggctctctgttctcc 240

                                              
Query: 245 ttcctacttagaagggatttctccatctgcccatg 279
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 ttcctacttagaagggatttctccatctgcccatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)