BAC Information

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BAC

Clone NameMSMg01-312C07
Chromosome5 (Build37)
Map Location 32,682,553 - 32,682,878
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2, LOC672217, Plb1
Downstream geneEG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312C07.T7 (MSMg01no312_c07.b1)MSMg01-312C07.TJ (MSMg01no312_c07.g1)
ACCAG434444AG434445
length732731
length of high quality
(start - end)
283 (127 - 409)336 (73 - 408)
definitionCHROMAT_FILE: MSMg01no312_c07.b1 PHD_FILE: MSMg01no312_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:09 2005CHROMAT_FILE: MSMg01no312_c07.g1 PHD_FILE: MSMg01no312_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAAGCCTTCCCTCGGCTCAAGGACTGCCTAGGACATTGAAACACT
TGTTGAGGCTAATATATTTTAGCTATATGTCAAAATAATCCTTAGAGGCA
CTTACAATAAAACAATATTGGAGGAAAGCACACAGATCCGCTCACCGACT
AAAGCAAGGACAGATTTGGAGCATTCATTATTACAGGATGCCACGGTTTC
AGGAGACTAAGTTTCCGTGAACTTTTCACCTCAGGACTACATCCAAGCTT
TTGGGCCTGTCACAGTCACTACTGGAGTGGGTGTGGCAATTTGGAAAGAT
GGAATGTCAATAAAGGTATTGCCTCTGTTAGGTTGGACCATGGGCATGTC
TGTGGAGCATCTTCCCCCCCGATGACTGATGGGAGAGGGCTTAGTCCACT
GTGGGCCATACCGCTCTTGGGCAGGTGGTGCTGGGTTGTAGGAAAAAGCA
AACTGAGCAAGCCACAGAGAAGCAGCCAGTAAGTAGTTTCCCTCCATGGT
CCCTGCTGAGTTACTGCTCTCACTTTACTCAGTGATTGATGTAACAGGAA
TATGTAAACCACATAAACTCAATTTGCTTTGTTCTGTGTTTTACCCAAGT
ATCAGAAAACCAAATTAAGATGGCGTCACTGTTTTCACTATCATGACCTT
ACCGTTTAGGCCCTGATGTTTGTTACTACCAC
CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGTATTTGCTGATGATGCAAAGGGAC
GGGGGGGAGGGGGGGTGACCACTATGCGGTGTGAAGGGCCCACCTCCTGC
AGGCTCAACTGCTTTTCATCTCCAAAGCCAATCCTTCCAGGTGTGTGCCC
TGGACTTGTCCTTCTAGCCACATCTCTCTTGAATCATACACTCATCAACC
TTTTCACCGTCCTCCCTCCTGAAGTGCTCCTTTCTCTGTGTACAGCCTGC
CTCATAGAAGTCTCACCATGTCCCACCCAGATCCTGCTGGGACAGACTTC
TCAGTGGTTGCCTACCCATTCATACTCACCCCATACCAATGCCAGAGATG
TCTCCTGTGTCCCACCCCCAATCCCTGAGAACCCACATTCATCACACTGA
CTGAGAATAATGATTTGTCCACCCCAAAAATCCAGCTCCATGAAGAGTCT
CCCTCCTCCCCACAACCTCCTGCCTTGTGACCCCTTTTTCTTGGCCTCAC
CTCAGCTGCCACTAATACCTTCTAGCCTAATTTGTGTTGGTCACGTTTGT
ACGCACCCCCTGATGACCCGGCTGTCCCTATCTACTTTGTTCACCCTGAT
GACCACTCTCTGCTTGAGAAAATTATTAAGTAAAAGCTTAAAAAACCTTT
CACACGACCTGGCCTTTATTGTCCACTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_c07.g1 MSMg01no312_c07.g1 CHROMAT_FILE:
MSMg01no312_c07.g1 PHD_FILE: MSMg01no312_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:09 2005
         (336 letters)



>mm_chr5_32682343_32683078
          Length = 736

 Score =  557 bits (288), Expect = e-163
 Identities = 320/336 (95%), Gaps = 10/336 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtatttgctgatgatgcaaagggacgggggggagggggggtgaccactatgcggtgt 60
           ||||||||||||||||||||||||||||||||| | |||         ||||||||||||
Sbjct: 211 tgtgtatttgctgatgatgcaaagggacgggggtg-ggg---------actatgcggtgt 260

                                                                       
Query: 61  gaagggcccacctcctgcaggctcaactgcttttcatctccaaagccaatccttccaggt 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 gaagggcccacctcctgcaggctcaactgctttttatctccaaagccaatccttccaggt 320

                                                                       
Query: 121 gtgtgccctggacttgtccttctagccacatctctcttgaatcatacactcatcaacctt 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gtgtgccctggacttgtccttctagccacatctctcttgaatcagacactcatcaacctt 380

                                                                       
Query: 181 ttcaccgtcctccctcctgaagtgctcctttctctgtgtacagcctgcctcatagaagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaccgtcctccctcctgaagtgctcctttctctgtgtacagcctgcctcatagaagtc 440

                                                                       
Query: 241 tcaccatgtcccacccagatcctgctgggacagacttctcagtggttgcctacccattca 300
           |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 441 tcaccatgccccacccagatcctcctgggacagacttctcagtggctgcctacccattca 500

                                               
Query: 301 tactcaccccataccaatgccagagatgtctcctgt 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactcaccccataccaatgccagagatgtctcctgt 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)