BAC Information

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BAC

Clone NameMSMg01-312F15
Chromosome5 (Build37)
Map Location 63,132,187 - 63,132,510
singlet/doubletsinglet
Overlap geneCentd1
Upstream geneLOC100041524, G6pd2, LOC100041543
Downstream gene3110047P20Rik, LOC100042133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312F15.T7 (MSMg01no312_f15.b1)MSMg01-312F15.TJ (MSMg01no312_f15.g1)
ACCAG434594AG434595
length735730
length of high quality
(start - end)
331 (41 - 371)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no312_f15.b1 PHD_FILE: MSMg01no312_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:24 2005CHROMAT_FILE: MSMg01no312_f15.g1 PHD_FILE: MSMg01no312_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAAACAAATATAAAAATCAGGAGTGGGAGTACCCAGAAATGTCCAGACT
TCAGGAAGCTATAGCAGCAGGATTGGGAGTCCCAGGCCAGACAGTGTTAC
ACAGGCAGACCCTTCCCCTAGACAGAAGTTGTCATCTATGGCCAAGCTAC
TGCATCTGTGGCAAAAGCGAAAAGTCACACAGAGAAGAATGAACACAAAC
TTCCAAGTACAGGTGACATAAGACATGGCAGGAAGAGAGAGCCAAGCAAA
CTCATATGGTAATTTCTTAACCAGCTAAAGATTGAATCTACTATGAAAAG
ATGATCGTTTTTTGCCTGCATGCCCGCTTTGTTACCACTGTTATAAAGTT
TTGTTCCACTTTACCACCTTTGGGATGCTTGTTACTTTACAGCTTATGAA
TAATTTTTTCTACACTGAAAGTCTTGGATACAAAAGGGAAAAAGAATAAC
TCAATCAAGTGAATATTCAATACACCTATAGAAGTAATTTTCATACTGTG
TGTGTGCACGTGCGTGTGTGTGTGTGTGTGTGTGTGTGCGCACGTGCGTG
TGTGTGTGTGTGTGTGTGTTATTCCGCACATTATCATTATTTTGTCCTTA
TTTTCTATTCTCCTCTCTTTTTTTTTCTTCCTTTTCTCTTACTTCTTTTC
ACTTCCCTTTCCCATTTTTATTTCTTCTTACTTCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGTTTATCTCTGTTCCTCGTTTTTTGTTT
GTTTGTTTTTTGGTTTTTGGGGTTTTTTAGTTCTTTTTTTTTTGCGTTTT
TTTCTTTCATTTTTTATTAGGTATTTTCTTATTTTACATTTCAAATGCTA
TCCCAAAAGTCCCCCATACCCTCCCCGCCCCACTCCCCTACCCACCCACT
CCCACTCCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTTGC
AAGACCAAGGGGCCTCTCTTCCCAATGATGGCTGACTAGGCCATCTTCTG
CTACTTATTCTTTTACCCCCCCCCCCCCTGGGTGTACTGGTTAGTTCATA
TCGTTGTTCCTCCCACAGGAAAGCACAACCCTTTAGCTCCTTGGGTACTT
TCTCTAGCTCCTCCATTGCGGGCCCTGTTCCATCCAATAGCTGACTGTGA
GTGTCCACTTCTGTGTTTGCCAGGCACCGGCATAGCCTCACAAGAGACAG
CTATATCAGGTTCCTTTCAGCAAAATCTTGCTGGCATATGCAATGGTGTC
TGCATTTGGAGGCTGATTATGGAATGGATCCCTAGGTAGGGCATTCTCTA
GATGGTCCATCCTTTTGTCTCAGCTCCAAACTTTTGTTCTGTAACTCCCT
TCATAGGTGTTTTGGTCCCCCTTCTAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_f15.b1 MSMg01no312_f15.b1 CHROMAT_FILE:
MSMg01no312_f15.b1 PHD_FILE: MSMg01no312_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:24 2005
         (331 letters)



>mm_chr5_63131983_63132713
          Length = 731

 Score =  588 bits (304), Expect = e-172
 Identities = 319/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaaacaaatataaaaatcaggagtgggagtacccagaaatgtccagacttcag 64
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaaacaaatataaaagtcaggagtgggagtacccagaaatgtccagacttcag 264

                                                                       
Query: 65  gaagctatagcagcaggattgggagtcccaggccagacagtgttacacaggcagaccctt 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagctatagcaggaggattgggagtcccaggccagacagtgttacacaggcagaccctt 324

                                                                       
Query: 125 cccctagacagaagttgtcatctatggccaagctactgcatctgtggcaaaagcgaaaag 184
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cccccagacagaagttgtcatctatggccaagctactgcatctgtggcaaaagcgaaaag 384

                                                                       
Query: 185 tcacacagagaagaatgaacacaaacttccaagtacaggtgacataagacatggcaggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 tcacacagagaagaatgaacacaaacttccaagtacaggtgacataaaacatggcaggaa 444

                                                                       
Query: 245 gagagagccaagcaaactcatatggtaatttcttaaccagctaaagattgaatctactat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagagagccaagcaaactcatatggtaatttcttaaccagctaaagattgaatctactat 504

                                   
Query: 305 gaaaagatgatcgttttttgcctg 328
           ||||||||||||| ||||||||||
Sbjct: 505 gaaaagatgatcgctttttgcctg 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)