BAC Information

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BAC

Clone NameMSMg01-312H17
Chromosome5 (Build37)
Map Location 5,465,226 - 5,465,538
singlet/doubletsinglet
Overlap gene1700015F17Rik
Upstream geneFzd1, LOC667678, Pftk1
Downstream geneCldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312H17.T7 (MSMg01no312_h17.b1)MSMg01-312H17.TJ (MSMg01no312_h17.g1)
ACCAG434688AG434689
length731727
length of high quality
(start - end)
320 (41 - 360)191 (121 - 311)
definitionCHROMAT_FILE: MSMg01no312_h17.b1 PHD_FILE: MSMg01no312_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:34 2005CHROMAT_FILE: MSMg01no312_h17.g1 PHD_FILE: MSMg01no312_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTACCCAGTTCCTACCACATTGCAGGCTTTCCAGAGGCCACACTGGTTT
GCTGTCCTTCCTTACTTCCTTAACTATGACACAGCTCATTCTGAGTCATG
AATCACCTATGACGTCTGTTGTTTCCTCTTCTCTTGACACTGCACCTATT
CTAATGCCTCAGCAACACTATCTACCTGCCCCTCCCCCCAGTCCTTCAAG
CCTCCCATTCTTCCTGCAGGTGCTTGGCCTTAATGGTTTCTCTTCTTTCT
TGTGAATTCTAATGGCTATTCACCTGAACTCATTCCCCTACTTTTTTGTT
GCTAATTTTTTTGAAGCGCCCACCCCACCACATATAAAAGTAGAGGAAAC
ATACCTGGGGTCCACCCATGAGAACACATTGACTGTCCTCTTGAGGAAGG
TGAAGTGGCAGGATCCCTTGAGTCCAGGATTTGAAGGCCAGCCTATGTAA
CTAATAAGAACCCTATCTTTAATAGGTAACACATGAGATAGTATAATAAA
ATTTTATACCACCAAAGATCATCTTGGATAGCTTTGTCTCATGAATGTCT
TCTCCTTCTAATTAGACTATTGTGAAGTCAATAGTTAATTGGATACCATA
ATTTCTTTGTAACTATTTGACCCTCCATATTAACGCATTATCTCTATAAT
TCCTTCTAAAAATTATCTATTTACCCAGATA
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTACTTCTACAGTCTTAAGCCCATGAAGTA
ATTTCTCAGAGTTTCCCCGCAAAGAATCAAAACCACCTCCAGAGCCTGAT
ATGAGCCCAACACCCCACCACATCCCCATGCACTCTTTCCTGCACAATCT
CAGGGGTCTCAGTATATAGTCCAGGCTAGCCTTGAACTTATGATTCTCCT
GGCTCAGCCTCCCACCCAAGGGGATTCCAGTGCACCACTCATGCCCAGCT
CTTCTCTGTTTCTTTTTTTTTGCTGCACGGGCGTCTTCGTTAGGGCCATA
TCTTTGGTATTTCCCAANCCCAAACCCCACGCTTATAAAGGAAAANANNN
AGNGGAGGCCCACCAAACCGNTACNGGAAAAAGGGGGGGGGGGGGTGACA
GGACACATGGCAGTGTGCAGGCACACATGCTGCTAGAGGAGCCAAGTTCT
ACATCTTGATCTGAAGGCAGCAAGGAAGAGACTGGATTCCATGATGGGTA
GAGCTTGAGCATAGGGGAATCTATGCCAATTCCCTCAGTGACACACTTTT
TCCAACAAGGCCATACCCCCTAATAGTGCCACTTCCCATGTTTTTATTAT
TTAAACACAATAGGCTATGGAGACCATTGCTATTCATCCCACTACTGTGG
ATCCTTGAAGAAAAAGTTCATACAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_h17.b1 MSMg01no312_h17.b1 CHROMAT_FILE:
MSMg01no312_h17.b1 PHD_FILE: MSMg01no312_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:34 2005
         (320 letters)



>mm_chr5_5465022_5465741
          Length = 720

 Score =  559 bits (289), Expect = e-164
 Identities = 307/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctacccagttcctaccacattgcaggctttccagaggccacactggtttgctg 64
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 517 gaattctctacccagttcctaccacattgcaggctttccacaggccacactggtttgctg 458

                                                                       
Query: 65  tccttccttacttccttaactatgacacagctcattctgagtcatgaatcacctatgacg 124
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 457 cccttccttacttctttaactatgacacagctcattctgagtcatgaatcacctatgaca 398

                                                                       
Query: 125 tctgttgtttcctcttctcttgacactgcacctattctaatgcctcagcaacactatcta 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 397 tctgttgtttcctcttctcttgacactgcacctattctaatgcctcagcaacactagcta 338

                                                                       
Query: 185 cctgcccctccccccagtccttcaagcctcccattcttcctgcaggtgcttggccttaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cctgcccctccccccagtccttcaagcctcccattcttcctgcaggtgcttggccttaat 278

                                                                       
Query: 245 ggtttctcttctttcttgtgaattctaatggctattcacctgaactcattcccctacttt 304
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 277 ggtttctcttctttcttgtgaattctaatggctattcacctgagctcattcccctacttt 218

                        
Query: 305 tttgttgctaatt 317
           |||||||||||||
Sbjct: 217 tttgttgctaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)