BAC Information

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BAC

Clone NameMSMg01-312I10
Chromosome5 (Build37)
Map Location 79,445,331 - 79,445,612
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312I10.T7 (MSMg01no312_i10.b1)MSMg01-312I10.TJ (MSMg01no312_i10.g1)
ACCAG434719AG434720
length755743
length of high quality
(start - end)
324 (40 - 363)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no312_i10.b1 PHD_FILE: MSMg01no312_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:37 2005CHROMAT_FILE: MSMg01no312_i10.g1 PHD_FILE: MSMg01no312_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAA
TTCCTGATCTTCCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCA
AATGCTTTTTCTAAATCTAACAAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATC
CCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTA
ATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATC
GATATTCATAAGAGAATTTGGTCTGAAGTTCTCTATCTTTGTTGGATCTT
TCTGTGGTTTAGGTATCACAGTAATAGTGGCTTCATAAAATGAGTTGGGT
AGAGTACCTTCCCACCCTATCTTGTGAAATAGTTTGTGCAGAACTGGAAT
CAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTC
CTGGGCTTTTATTGGCTGTTAGACTATTATTAACTGCTTCTATTTCTTTA
GGGGATATGTGACTGTTTATAAGGTTCACTCGATCCTGATTCCATTTCGG
TACCTGGTATCCGTTCCTTAAATTTGATCATTTCTTCCTTGCTTTTTATT
TTTTTGTTCACCATTAACCCCTTTTTCAATCTATCTGATGTATGTTTTAG
TAATTTCTCTAGAGCCAATCCTTTCTTTTTTCCCTCCCTTTTATTCACCT
CTTTA
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTAATTGGGTTTGCTAAAAATTGCAG
GATAGGTTATATAAAGGCCCATTTCCTGCATCACCTTGCACCAACTAAAC
TTAAAGAATGCAGTATCACTGTGCTGTCTGACAGGACTCCCACAGGATAT
CAAGTTCCTTGTACATGACAGCGAACTATTTTATGAAGAGACTCGAACAA
GAATGTGTTTCTAGATTTAAACAAAAATTGTCAAAGGAATTTGGGATTTT
CCTTTTCTTGCTAGCAACACTTTACTCTCATACCTTGACAGGGTTATATA
GCCCATTCTTGATTGCCCCTAACGGACCCTTCTATTGGAAATAGATTTAC
CTGAAGACACAGCCACAACAAACAAAAAAATATACTCGAGAGATGATCCA
CCATGCCACAGGGGCACCTGTTCCACTATGTTCACAGCGGCCTTATTTGT
GATAGCCAGAATCAAGAAACAATCTAGATGTCTCAAGACAGAAGAATGGA
TACAGGAAATGTGGCTCATTTACACAATGGAATACTACTCAGCTATTAAG
AGTGAGAGCAGCTGGTCTTGGTGACACACACCTTTAATCCCTGCACTTGC
GAGGCAGAGGTAGGTAGATTTCTTCAGTTCGAGGCCAGTCTGGTCTACAA
AGTTAGTTTCAGGACAGTCAGTGCTATCTCAAAAAAGAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_i10.g1 MSMg01no312_i10.g1 CHROMAT_FILE:
MSMg01no312_i10.g1 PHD_FILE: MSMg01no312_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:37 2005
         (284 letters)



>mm_chr5_79445131_79445814
          Length = 684

 Score =  516 bits (267), Expect = e-151
 Identities = 279/283 (98%), Gaps = 2/283 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaattgggtttgctaaaaattgcaggataggttatataaaggcccatttcctgcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgtaattgggtttgctaaaaattgcaggataggttatataaaggcccatttcctgcatca 423

                                                                       
Query: 61  ccttgcaccaactaaacttaaagaatgcagtatcactgtgctgtctgacaggactcccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccttgcaccaactaaacttaaagaatgcagtatcactgtgctgtctgacaggactcccac 363

                                                                       
Query: 121 aggatatcaagttccttgtacatgacagcgaactattttatgaagagactcgaacaagaa 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 362 aggatatcaagttccttgtacatgacagcgaactattttttgaagagactccaacaagaa 303

                                                                       
Query: 181 tgtgtttctagatttaaacaaaaattgtcaaaggaa-tttgggattttccttttcttgct 239
           |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 302 tgtgtttctagatttaaacaaaaattgtcaaaggaattttggg-ttttccttttcttgct 244

                                                      
Query: 240 agcaacactttactctcataccttgacagggttatatagccca 282
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agcaacactttactctcataccttgacagggttatatagccca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)