BAC Information

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BAC

Clone NameMSMg01-312M11
Chromosome5 (Build37)
Map Location 116,694,289 - 116,694,593
singlet/doubletsinglet
Overlap geneCcdc60
Upstream geneRnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798
Downstream gene4930562A09Rik, Hspb8, 1500001A10Rik, LOC433943, Gm1684, LOC665073, Suds3, Taok3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312M11.T7 (MSMg01no312_m11.b1)MSMg01-312M11.TJ (MSMg01no312_m11.g1)
ACCAG434900AG434901
length741776
length of high quality
(start - end)
309 (43 - 351)49 (66 - 114)
definitionCHROMAT_FILE: MSMg01no312_m11.b1 PHD_FILE: MSMg01no312_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:56 2005CHROMAT_FILE: MSMg01no312_m11.g1 PHD_FILE: MSMg01no312_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCAAGCCACAGAGTAAGCTGGATCCATTCTCTCTGGAGGGAGACGATA
TTCTCTGCCTTTTTCCCCGCTTCAGCTCCTGGTGGCTCCACAGCCCCTGG
TGCTCCTTGGCACCCGAGGTCGGCTTGGCTCACTGCGCACTGCATGGTCT
TTCTTTGACAGGGATTCCAGACTGGTCCTGATCCACTGCCCTTTTGCAAA
GCCCTTGTTTCCAGATCAGGTCACCCTGGTGGTTAAATCCTCATAGACAG
CTTGCCCAGGTTTAATAATCACCACGGAAGCACGGCGCTGAGCATTTTCA
GATATTTATTATTTTCCCCCCCCCCCACTCTCTGACTGAGTAAAAATGGC
AGGTGGGGGCGCCCCCTGAACAAAAAATACTTCTCTCTGCTTGCTGACTG
TGAACGCATTGTGGACAGCTACTTGCCACCATGATGGACTGTACCCTCAA
TCCGTCAGACAGAGTAAAATCCTCCCTCTTTCCCTGCTTCATCCGGTATT
TTGTCAATAAGAAAAGTGAAATCCAAACCCTACTTCTCCATACTTAATCC
TGGGCGTGTGTGTATGGAACCTGGGGGGCGGCTCCCTACTTAATACACTG
CAGACTGAAAACACTAGCATAAAAGATTGTTATACTTTTATACGCCATCT
CTCTACTCCTACTTCTCCCGCCTTAAAATCATTGCCTCATA
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTACCTAACAAAATTCTTTAAGTTACCAACTTGTTTAATCCCTACA
GCTTGATAAAATACCCCCGTGTGTGTGTGTGTGTGTGTGTGAGTGTATGT
GCGTGTGTTAAAATGCACAACAAACTCTGCCACCGGCATATATACAAAAC
TTCTAAAAATCTCCGAAATCTCCCCCAACATGCTCTTAACTTCGTTATAT
CCCATACTCACACCAGTATAATATACAACAAAAACCATTCTATCCATCCA
CTACAAAAAGCCTTATATTTTACACATGCCTTCCCAACCCTTTTAATCCT
ATCACTTTTTACCCACACCCCCCTACAATCTTTCTTGATTATGAAATCAA
ACCGTTTAACCCCCCCCTCCTACAAAACAAACCTATCTAACCACTTCCCA
ACCCAGTCCTAACAAACCCAAAACTACATACACAACAAGATATCAATATA
TATACTCCCACACATACACAAACACACAGATATACATACCTACATAACCC
ACATAGATACACCCTCTTTTACCCAATTACCCACCATTACATTCCATACA
AAATATCACCATATAATAACCCCACTTTCCCTTTTCAATCCCCCGCCTAT
ATCCACCCTTTTTTTCCTATTTATTCCCCCCCCCTTCCCCTTTTTATTTC
TACACTACCTCCCCCTACTATATACCATAAATTTATATTAACCCAACATA
CACTTTTACTATCCCACCCCTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_m11.b1 MSMg01no312_m11.b1 CHROMAT_FILE:
MSMg01no312_m11.b1 PHD_FILE: MSMg01no312_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:56 2005
         (309 letters)



>mm_chr5_116694085_116694793
          Length = 709

 Score =  507 bits (262), Expect = e-148
 Identities = 295/306 (96%), Gaps = 2/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaagccacagagtaagctggatccattctctctggagggagacgatattctct 64
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 509 gaattcccaagccagagagtaagctggatccattctctctggagggagatgatattctct 450

                                                                       
Query: 65  gcctttttccccgcttcagctcctggtggctccacagcccctggtgctccttgg-caccc 123
           |||||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 449 gcctttctcccagcttcagctcctggtggctccacagcccctggtgctccttggtccccc 390

                                                                       
Query: 124 gaggtcggcttggctcactgcgcactgcatggtctttctttgacagggattccagactgg 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaggtcggcttggctcactgcacactgcatggtctttctttgacagggattccagactgg 330

                                                                       
Query: 184 tcctgatccactgcccttttgcaaagcccttgtttccagatcaggtcaccctggtggtta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 329 tcctgatccactgcccttttgcaaagcccttgtttccagatcaggtcaccctggtggtt- 271

                                                                       
Query: 244 aatcctcatagacagcttgcccaggtttaataatcaccacggaagcacggcgctgagcat 303
           ||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 270 aatcctcatagtcagcttgcccaggtttaagaatcaccacggaagcacagcgctgagcat 211

                 
Query: 304 tttcag 309
           ||||||
Sbjct: 210 tttcag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)